Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45190 182 / 2e-57 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) AT4G00180 176 / 6e-55 YABBY YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2) AT1G08465 155 / 3e-47 YABBY YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1) AT2G26580 146 / 5e-44 YABBY YAB5 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) AT1G23420 129 / 1e-36 YABBY INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) AT1G69180 114 / 3e-31 YABBY CRC CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032240 [exp] 398 / 3e-142 AT2G45190 193 / 1e-61 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10030596 [exp] 135 / 2e-38 AT1G23420 194 / 8e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10013028 [exp] 134 / 2e-38 AT1G23420 193 / 4e-62 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10029135 [exp] 134 / 2e-38 AT1G23420 200 / 9e-65 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10010361 [exp] 125 / 1e-34 AT2G45190 171 / 4e-53 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10036496 [exp] 123 / 1e-34 AT2G45190 183 / 2e-58 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10036811 [exp] 115 / 6e-32 AT1G69180 187 / 4e-61 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) Lus10019407 [exp] 115 / 1e-31 AT2G26580 228 / 8e-77 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10000644 [exp] 104 / 2e-27 AT1G69180 177 / 5e-57 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120200 [exp] 216 / 1e-70 AT2G45190 236 / 4e-79 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.003G112800 [exp] 214 / 6e-70 AT2G45190 243 / 1e-81 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.014G066700 [exp] 196 / 5e-63 AT2G45190 277 / 3e-95 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.002G145100 [exp] 184 / 3e-58 AT2G45190 265 / 2e-90 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.006G067800 [exp] 154 / 7e-47 AT2G26580 253 / 5e-87 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.018G129800 [exp] 151 / 1e-45 AT2G26580 250 / 5e-86 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.009G000100 [exp] 149 / 3e-45 AT1G08465 215 / 3e-72 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.001G214700 [exp] 139 / 6e-41 AT1G08465 183 / 8e-59 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.008G189000 [exp] 134 / 9e-39 AT1G23420 213 / 7e-70 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Potri.010G042400 [exp] 133 / 3e-38 AT1G23420 191 / 3e-61 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF04690 [flax] [poplar] YABBY YABBY protein
Representative CDS sequence Show only first row Show all	>Lus10024603 pacid=23161635 polypeptide=Lus10024603 locus=Lus10024603.g ID=Lus10024603.BGIv1.0 annot-version=v1.0 ATGTCAATGTCTTCCATGACCTTGTCCTTGGACCACCACTACCAACAACAACAACAGCAACAGCTTCCTCCTTCTCCTCCGGAAGAACAGCTCTGTTATG TCCATTGCAACATCTGCGACACTGTCCTCGCTGTGAGTGTGCCGAGCTCGAGCTGGTTCAAGACTGTGACGGTCCGATGTGGACACTGCACCCATCTCCT CCCTGTCAACATGATGCGCCCTAACTTCCTTCCTACTTCCCCTACGCCGATGAATCCTCCTTTCCAACTCTTCTCCCCTACTACTACTACTCAATTGGAT GAGTTCTCATCAAACCCTAATGCCAACACCCCTTCTCCACCACCTTCACAGAGCTTGTTGATGTTCAACAACCAGATCAACGATTTCGAGTTCCAGTCCG CTGCTCGATTTGCACCGGATCATCATCAACATCTCGAGCTCCCTAGGCCCCCATTGTTTGTCAACAGACCTCCTGAGAAGAGACAGAGAGTCCCATCTGC CTACAACAGATTCATCAAGGAGGAGATCCAGAGGATAAAGGCAGAAAACCCAGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCC CACTTCCCACATATTCAGTTTGGGCTGATGCCAGATCAGCCCTTGAAGAAGAAGGCTAACACTCTCCTTCATCACCCTCCTCAGGAGGCAGAAGGGGGGT TCTTCAGTTCAGCAAATGTTGGAGTTGCTGCTGCTCCTTACTGA
AA sequence Show only first row Show all	>Lus10024603 pacid=23161635 polypeptide=Lus10024603 locus=Lus10024603.g ID=Lus10024603.BGIv1.0 annot-version=v1.0 MSMSSMTLSLDHHYQQQQQQQLPPSPPEEQLCYVHCNICDTVLAVSVPSSSWFKTVTVRCGHCTHLLPVNMMRPNFLPTSPTPMNPPFQLFSPTTTTQLD EFSSNPNANTPSPPPSQSLLMFNNQINDFEFQSAARFAPDHHQHLELPRPPLFVNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWA HFPHIQFGLMPDQPLKKKANTLLHHPPQEAEGGFFSSANVGVAAAPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	1.0	0.9965
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	1.4	0.9908
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	2.8	0.9785
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	4.6	0.9876
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	5.3	0.9862
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10041221 [exp]	5.7	0.9620
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	7.1	0.9818
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	7.5	0.9694
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	8.4	0.9772
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	9.8	0.9789

Compare expression of checked genes

Lus10024603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.