Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 803 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 801 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 471 / 2e-159 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT5G11920 445 / 5e-150 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT3G13784 441 / 7e-148 ATCWINV5 cell wall invertase 5 (.1) AT1G55120 440 / 3e-147 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G52600 429 / 3e-143 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 424 / 3e-141 ATCWINV4 cell wall invertase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032242 [exp] 1173 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10004340 [exp] 1003 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10028922 [exp] 998 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004031 [exp] 822 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 749 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10030278 [exp] 597 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10008392 [exp] 455 / 5e-153 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10017015 [exp] 455 / 2e-152 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10021339 [exp] 450 / 2e-151 AT2G36190 691 / 0.0 cell wall invertase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 927 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 872 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 733 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 480 / 3e-163 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 468 / 1e-158 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 468 / 2e-158 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 464 / 7e-157 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 456 / 8e-154 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0143 [flax] [poplar] PF11837 [flax] [poplar] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Lus10024605 pacid=23161632 polypeptide=Lus10024605 locus=Lus10024605.g ID=Lus10024605.BGIv1.0 annot-version=v1.0 ATGGCAGACCACGAGCAGCCATTCCTTCTTCCGGTAACATCCGGATCTGTAAACCCTGAACACGCTCCCACGTCGGATGCGGCTGTAGGGAGATCCAACA AAAGGATTCTTCTCCTCGCGGGGTTCGCCGGAATTTTCATCGTCTGCTTGGTCTTCACCGGCGGGTACGACAAGTCCGGCGCGGTGGTTAAATTCCCCGA ATTGGTGGGGACGAGTGTGATTAATAGTGGGCCGGAGAAGATTTCTCGTGGGAAGTCGGCCGGTGTGTCGGAGAAGTCTAATCTTCTTCACCGGCGGCAG ACGAATCTCATCGGCGGCGAGAAAGAAGAAGCGTTCCCGTGGAATAACAGTATGTTGTCTTGGCAGAGAACTGCGTTTCACTTTCAGCCTGAGAAAAATT GGATGAACGGTCCATTGTACTACAAAGGGTGGTACCATTTTTTCTACCAATACAATCCAAACGCAGCCGTTTGGGGTGATATCGTGTGGGGCCATGCGGT CTCACACGACCTAATTCACTGGCTCCACCTTCCATTAGCGATGGTTGCTAATCAATGGTATGACGTTAATGGTGTATGGACCGGTTCGGCCACGATCCTC CCCGACGGCAAGGTTGTGATGCTCTACACCGGTTCGACCAATGAATCGGTCCAAGTCCAAAACCTAGCCTATCCAGCAGACCCATCCGACCCGCTCCTCC TCGAATGGGTCAAACACCCTGCAAACCCGGTCCTCGTCCCTCCACCGGGCATCCACTACAAGGACTTCCGCGACCCGACCACTGCATGGCGAACATCCGA AGGGAAGTGGCGAATCACGATCGGGTCAAAGGAATGTGGGACAAAGTACAACCGAACCGGAGTCGCTCTCATCTACGACACAGAAGATTTCATTAACTAC GACCTGAAACCCGGGTTCCTCCACGGAGTACCGGATACAGGAATGTGGGAGTGCGTCGACTTTTACCCGGTATCCGTCGCCGGCGGGAACGGGCTGGACA CATCGGCGAACGGCCCCGGAGTCCGCCACGTGGTGAAGGCCAGCATGGACGATGATCGGCACGATTACTACGCGATCGGAACTTATGACGAGGCGAAATC GAAATGGTTCCCCGATAACCCGGAAATAGACGTGGGAATCGGGATTCGGTATGATTATGGAATCTTCTATGCTTCCAAGACTTTTTACGATCAGAGTAAG CAGAGGAGGATTCTATGGGGGTGGATTGGTGAATCCGACAGTGAAGTTGCTGACATTAGGAAAGGATGGGCTTCACTTCAGAGCATTCCAAGGACTGTTG TTCTAGATACAAAGACGGGCAGCAATCTTCTACAGTGGCCGGTGGAAGAGACAGAAAGCTTGAGATTGAGGAGCAAGGAGTTCAATAACGTTGCAGTTAA ACCGGGATCGATCGTCCCGCTCGAGCTCGAAGCTGCCACACAGCTAGACATCGAAGCAGAGTTCGAGCTAGACCCCAAAGCCGTGCAAACCGCAGCAGAG TCCAATGAGGACTTCAAATGCACCGGCAGCAGGAACAGAGGCGCATTGGGACCGTTCGGCCTGCTAGTCTTGGCCGACGACACACAGACCGAGCAGACAC CGGTGTACTTCTACGTCGTGAAGGGCTTGAACGGAACGTTAAGAACCCACTTCTGCACCGACCAGATGCGGTCTTCGCTGGCGAATGACGTGAACAAGCA GGTGTACGGGAGCTCTGTTCCGGTCCTGGAAGGGGAGAAGTTCAAGGTGAGGGTTTTGGTTGATCACTCAATCGTCGAGAGCTTCGGGCAAGGAGGGAGG GTTGTGATTAGCTCGAGGGTTTACCCGACGAGGGCGATCTACGGTGCTGCTAAGGTGTTCTTGTTTAACCGTGGGAAGGCAGGGGACGTGAGGGGTTCTG TAAAGGTTTGGCAGATGAACTCTGCTTTCATCCGGCCGTATTCCAAACGGTAG
AA sequence Show only first row Show all	>Lus10024605 pacid=23161632 polypeptide=Lus10024605 locus=Lus10024605.g ID=Lus10024605.BGIv1.0 annot-version=v1.0 MADHEQPFLLPVTSGSVNPEHAPTSDAAVGRSNKRILLLAGFAGIFIVCLVFTGGYDKSGAVVKFPELVGTSVINSGPEKISRGKSAGVSEKSNLLHRRQ TNLIGGEKEEAFPWNNSMLSWQRTAFHFQPEKNWMNGPLYYKGWYHFFYQYNPNAAVWGDIVWGHAVSHDLIHWLHLPLAMVANQWYDVNGVWTGSATIL PDGKVVMLYTGSTNESVQVQNLAYPADPSDPLLLEWVKHPANPVLVPPPGIHYKDFRDPTTAWRTSEGKWRITIGSKECGTKYNRTGVALIYDTEDFINY DLKPGFLHGVPDTGMWECVDFYPVSVAGGNGLDTSANGPGVRHVVKASMDDDRHDYYAIGTYDEAKSKWFPDNPEIDVGIGIRYDYGIFYASKTFYDQSK QRRILWGWIGESDSEVADIRKGWASLQSIPRTVVLDTKTGSNLLQWPVEETESLRLRSKEFNNVAVKPGSIVPLELEAATQLDIEAEFELDPKAVQTAAE SNEDFKCTGSRNRGALGPFGLLVLADDTQTEQTPVYFYVVKGLNGTLRTHFCTDQMRSSLANDVNKQVYGSSVPVLEGEKFKVRVLVDHSIVESFGQGGR VVISSRVYPTRAIYGAAKVFLFNRGKAGDVRGSVKVWQMNSAFIRPYSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10024605 [exp]	0	1
AT2G44890		CYP704A1	"cytochrome P450, family 704, ...		Lus10038000 [exp]	4.9	0.8276
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	13.9	0.8390
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	17.0	0.7655
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10005769 [exp]	19.3	0.8289
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	23.6	0.8308
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	31.2	0.7675
AT4G35690			Arabidopsis protein of unknown...		Lus10028381 [exp]	33.7	0.7899
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Lus10037810 [exp]	40.7	0.7873
					Lus10012313 [exp]	40.9	0.8213
AT3G22490			Seed maturation protein (.1)		Lus10006121 [exp]	43.0	0.7701

Compare expression of checked genes

Lus10024605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.