Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12230 545 / 0 Aldolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032243 [exp] 711 / 0 AT1G12230 547 / 0.0 Aldolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120400 [exp] 570 / 0 AT1G12230 557 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00923 [flax] [poplar] TAL_FSA Transaldolase/Fructose-6-phosphate aldolase
Representative CDS sequence Show only first row Show all	>Lus10024606 pacid=23161532 polypeptide=Lus10024606 locus=Lus10024606.g ID=Lus10024606.BGIv1.0 annot-version=v1.0 ATGTCAGCTGCTACAGCTCTCTCCTCCAACTACCCTTCTCTGGTACAAAAACCATTCCCCAAGAATGGATCATCATCATCTTCATCTTCCCAAGCTTGCT TCAACCTCCGCCGTCTATCTTTCTCTCAACTTCGTGCCTCTTCAACTTCATCTGTCCAGTCTGGTTCAAGCACTAGCAGTGAATTGGATGCAGTGTCTAG CTTCAGTGAGATTGTTCCTGATACTGTGATCTTCGATGATTTCGAGAAGTTTCCTCCAACTGCAGCAACTGTTAGCTCCTCGCTTCTCCTGGGCATATGC AGCCTTCCTGATACCAAGTTCCGGAATGCTGTGGATATGGCATTGGCGGATTCTGGATGTGTAGCTTTGGACAACCCGGAGCTTAGACTGTCTTGTTTTA GCAGCAAGGCTTTAGTGAATGTTGGAGGGGATCTTGCGAAAATGGTACCGGGGAGGGTTTCGACTGAAGTGGATGCGCGGTTGGCGTATGATACTCATGC TATAATCAGGAAGGTCCATGACTTGGTGAAGCTGTACAACGAAATTGATGTATCTGAAGACCGCTTGTTGTTCAAAATCCCCGCAACTTGGCAAGGAATT GAGGCTGCTAGGCTGTTGGAATCTGAAGGCATACAAACACATCTGACATTTGTATACAGCTTTGCTCAAGCTGCTGCTGCTGCTCAAGCTGGTGCATCAG TCATTCAGATTTTCGTCGGACGACTCAGGGATTGGGCTCGCAATCATTCCGGGGACATTGAGGTAGATGCTGCTTTGAAAAGAGGAGAGGATCCGGGCTT GGCTTTGGTTACGAAGGCTTATAACTACATTCACAAGTACGGACACAAGTCGAAGCTTATGGCAGCAGCAGTTCGAAACAAACAGGACTTATTCAGCCTT TTAGGGGTCGACTACATCATTGCACCATTGAAAGTACTATCGTCTCTCAAGCAGTCCATCGCCACCGATGACAAGTACGGTTTTGTGCAAAGACTATCCC CGGAATCTGCTGCCAACTATAGCTTCAAGGATGATGAGCTAGTGAAGTGGGATCAACTAAGCCTAGCATCGTCAATGGGACCTGCAGCAGTCGAGCTTCT AGCTAGCGGACTGGATGGCTACGCAATCCAAGCGAACCGTGTCGAGGAGCTGTTTGCTAAGATCTGGCCACCACCAAATGTGTAG
AA sequence Show only first row Show all	>Lus10024606 pacid=23161532 polypeptide=Lus10024606 locus=Lus10024606.g ID=Lus10024606.BGIv1.0 annot-version=v1.0 MSAATALSSNYPSLVQKPFPKNGSSSSSSSQACFNLRRLSFSQLRASSTSSVQSGSSTSSELDAVSSFSEIVPDTVIFDDFEKFPPTAATVSSSLLLGIC SLPDTKFRNAVDMALADSGCVALDNPELRLSCFSSKALVNVGGDLAKMVPGRVSTEVDARLAYDTHAIIRKVHDLVKLYNEIDVSEDRLLFKIPATWQGI EAARLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDIEVDAALKRGEDPGLALVTKAYNYIHKYGHKSKLMAAAVRNKQDLFSL LGVDYIIAPLKVLSSLKQSIATDDKYGFVQRLSPESAANYSFKDDELVKWDQLSLASSMGPAAVELLASGLDGYAIQANRVEELFAKIWPPPNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	0	1
AT1G48160			signal recognition particle 19...		Lus10011152 [exp]	4.0	0.9017
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	4.5	0.9021
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	5.9	0.8942
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	6.3	0.8863
AT2G34750			RNA polymerase I specific tran...		Lus10026162 [exp]	7.8	0.8482
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10036987 [exp]	8.5	0.8963
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	9.5	0.8987
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	10.6	0.8745
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	12.4	0.8892
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10029835 [exp]	13.0	0.8613

Compare expression of checked genes

Lus10024606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.