Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22590 531 / 0 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 507 / 0 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 483 / 3e-171 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT1G35910 384 / 2e-132 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 371 / 2e-127 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G39770 367 / 4e-126 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G78090 368 / 6e-126 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT2G22190 363 / 3e-124 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G65140 349 / 8e-119 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G22210 341 / 4e-116 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032244 [exp] 774 / 0 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031146 [exp] 491 / 1e-174 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031723 [exp] 475 / 2e-168 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10027208 [exp] 474 / 8e-168 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 455 / 3e-159 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019666 [exp] 371 / 1e-127 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10000687 [exp] 327 / 4e-110 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10019010 [exp] 310 / 2e-103 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 306 / 6e-102 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120500 [exp] 557 / 0 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 531 / 0 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.012G126100 [exp] 526 / 0 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 512 / 0 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.007G090900 [exp] 390 / 1e-134 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 389 / 2e-134 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 381 / 3e-131 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G001000 [exp] 333 / 1e-112 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 331 / 8e-112 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 278 / 8e-92 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10024607 pacid=23161526 polypeptide=Lus10024607 locus=Lus10024607.g ID=Lus10024607.BGIv1.0 annot-version=v1.0 ATGGAGATGAAATCAAGTAGTTCGTCTCCAGTTGTTGCTGATCCTGCTCCAATAAGCAAGTCAAGGCTTGGAATCCATTCACCATACTCACAGTCAGGAG CTTCATTCTCCAGTGGCAAGTACATAAACATTCCTAGAAAAAAGGCTGGAAAGCTTGATGACGTTCGCTCCAATGGGTGGCTCGACGCGATGAAATCATC GTCGCCTCCTCGTAAGAAGTTCATCAAGGGATTCAGCAACGAGGTTTCATTGGAAGATCCTGACTTTGCTTATTTGTCTTGGATGCTCAAGTATCCATCA GCACTCAAATCTTTCGAGCAAATTACCAATTCCGCAAGGAACAAGAAGATAGCAGTGTTTCTGGACTACGACGGGACACTGTCACCGATAGTAGATGACC CAGATCAAGCTATCATGTCGGAGGAGATGCGTTCTGCTGTAAGAAATGTAGCAAAGTATTTCCCAACTGCCATTATTAGTGGGAGAAGCCGTGACAAGGT TTTTGAGTTGGTAGGACTAACAGAGCTCTATTATGCTGGTAGCCATGGGATGGACATCAAGGGCCCAACCAACCAAACAGTGGCCAGTAGCCATCTTAAA TTTGTTGAATCTTCTGGCAAACAGGGCAAGGAGGAGAATCTTTTCCAGCCTGCCATAGAATTCATACCTATGATTGACGAGGTTTTTAGAACCCTCGTTG AGAATACAAAACAAATCAAAGGTGCAAAAGTTGAGAACCACAAGTTTTGTACCTCTGTACATTACCGTAACGTAGATGAAAAGAACTGGCCAGTTATCGC TCAACGTGTTCACGATATCCTAAAGGACTATCCTCGCTTGCGATTAACTCATGGGCGGAAGGTTTTAGAAGTCCGTCCAGAGATCGAGTGGGACAAAGGG AAAGCGGTCGAGTTTCTGCTCGAGTCACTCGGCCTAAGTAATCGGGACAACGTTCTGCCCTTGTACATCGGTGATGACCGGACCGACGAGGATGCATTCA AGGTGTTAAAGGAAGGGAAGAGAGGATGTGGAATCCTGGTCTCTTCTGTAGCTAAAGAGAGCAATGCAATCTACTCTCTCAGAGATCCTACCGAGGTGAA GAGATTTCTGAATTCATTGGTGATATGGAGGAGGCTTGAAGGTGGGAGTGGTGGTATGACAAACAGAAGAACAATTTAA
AA sequence Show only first row Show all	>Lus10024607 pacid=23161526 polypeptide=Lus10024607 locus=Lus10024607.g ID=Lus10024607.BGIv1.0 annot-version=v1.0 MEMKSSSSSPVVADPAPISKSRLGIHSPYSQSGASFSSGKYINIPRKKAGKLDDVRSNGWLDAMKSSSPPRKKFIKGFSNEVSLEDPDFAYLSWMLKYPS ALKSFEQITNSARNKKIAVFLDYDGTLSPIVDDPDQAIMSEEMRSAVRNVAKYFPTAIISGRSRDKVFELVGLTELYYAGSHGMDIKGPTNQTVASSHLK FVESSGKQGKEENLFQPAIEFIPMIDEVFRTLVENTKQIKGAKVENHKFCTSVHYRNVDEKNWPVIAQRVHDILKDYPRLRLTHGRKVLEVRPEIEWDKG KAVEFLLESLGLSNRDNVLPLYIGDDRTDEDAFKVLKEGKRGCGILVSSVAKESNAIYSLRDPTEVKRFLNSLVIWRRLEGGSGGMTNRRTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10024607 [exp]	0	1
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	3.5	0.8664
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Lus10000776 [exp]	6.9	0.8319
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	7.5	0.8198
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	10.5	0.8165
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10036199 [exp]	12.9	0.7249
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	13.4	0.7938
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	14.1	0.8298
AT5G42470			unknown protein		Lus10034533 [exp]	15.3	0.7643
AT5G04980			DNAse I-like superfamily prote...		Lus10028884 [exp]	17.7	0.7975
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	19.0	0.7457

Compare expression of checked genes

Lus10024607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.