Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62640 554 / 0 KAS III, KASIII 3-ketoacyl-acyl carrier protein synthase III (.1.2) AT1G71160 48 / 7e-06 KCS7 3-ketoacyl-CoA synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032246 [exp] 743 / 0 AT1G62640 581 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10028925 [exp] 608 / 0 AT1G62640 592 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10004342 [exp] 597 / 0 AT1G62640 582 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10020662 [exp] 49 / 5e-06 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1) Lus10006636 [exp] 42 / 0.0007 AT1G04220 618 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041508 [exp] 42 / 0.0009 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 42 / 0.001 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120900 [exp] 577 / 0 AT1G62640 632 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Potri.003G112101 [exp] 121 / 9e-33 AT1G62640 132 / 4e-37 3-ketoacyl-acyl carrier protein synthase III (.1.2) Potri.002G141400 [exp] 47 / 2e-05 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.014G056300 [exp] 43 / 0.0002 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.001G211400 [exp] 42 / 0.0007 AT1G71160 563 / 0.0 3-ketoacyl-CoA synthase 7 (.1) Potri.009G026800 [exp] 42 / 0.0008 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.010G080200 [exp] 42 / 0.0009 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08545 [flax] [poplar] ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10024608 pacid=23161570 polypeptide=Lus10024608 locus=Lus10024608.g ID=Lus10024608.BGIv1.0 annot-version=v1.0 ATGGCAAATGTGTCTGGGTTTTTGAGTAGTAGTAGCTCTTCAGTTCCAACAAGCTTAAGGAGGAAGATGAAGCTTTCTAATGGGGTTATTGGATCTGGGT TCTGCTCGGCTAAGTTAGTCCCCAGAAAAGGAATGGTCTTTGCATCCAGCAATGTTGAAGGTGCTGGCAAGGTTTCCTCTACTCAATCTCGGATGCCAAG GCTAGTAAGTCAAGGCTGCAAGCTTGTTGGATGTGGCTCAGCGGTTCCGAGTCTAAAGATCACAAACGAAGATCTTGCCAAAATGGTCGACACTTCCGAT CAGTGGATCTCTGATCGCACAGGGATTCGTAATCGACGAGTTCTTTCAGGTAAAGAAACCCTGATTTCTCTAGCATCCGAGGCAGCAAGGAAAGCGCTCG AGATGGCAGAGCTTGATGCCGATGATCTGGATATGATCCTACTGTGCACATCTACACCGGAAGATTTGTTTGGCAGTGCTCCACAGATCCAAAAGCAGCT TGGCTGCAAAGGACATACTTTGGCCTATGACATCACAGCTGCATGCAGTGGATTCATTATGGGGCTAGTCTCTGCTTCTTGCCACATTCGAGGAGGTGGA TTCAAAAACATCTTGGTGATTGGTGCTGATGCCCTATCTCGATACGTTGACTGGACCGATAGAGGAACTTGCATCCTCTTTGGTGATGCTGCTGGTGCTG TGGTTGTACAGGCTTGTGATAGTGAGGACGATGGTTTGTTTAGCTTCGATGTGAATAGCAATGGCGATGGCTCGAGACACTTAAACGCGTCGATCAAGCA AACCAAACCAGACCATGAACTCGGTTCCTCTAATGGATCGGCCGTTGCAGACTTCCCTCCACGAAGCTCCTCCTATTCGTGCATCAACATGAACGGGAAA GAGGTATACCGCTTCGCTGTGTCATCCGTGCCAGAGACTATCGAGTCTTCTCTCGAAAAGGCTGGCCTAACCTCAGCCAACATAGACTGGCTACTACTCC ACCAGGCTAACAAAAGGATAATCGATTCTGTTGCGGACCGTCTGAAACTCCCATCGGAGAGGGTGATATCGAATCTTGCGAATTACGGTAACACGAGCGC TGCTTCGATCCCGTTGGCTTTGGACGAAGCGGTTCGGAGTGGTAAGGTGAAGGCAGGAGATACGATTGCAGCTGCTGGGTTTGGTGCTGGTCTAACTTGG GGGTCTGCTATCATTAGATGGGACTGA
AA sequence Show only first row Show all	>Lus10024608 pacid=23161570 polypeptide=Lus10024608 locus=Lus10024608.g ID=Lus10024608.BGIv1.0 annot-version=v1.0 MANVSGFLSSSSSSVPTSLRRKMKLSNGVIGSGFCSAKLVPRKGMVFASSNVEGAGKVSSTQSRMPRLVSQGCKLVGCGSAVPSLKITNEDLAKMVDTSD QWISDRTGIRNRRVLSGKETLISLASEAARKALEMAELDADDLDMILLCTSTPEDLFGSAPQIQKQLGCKGHTLAYDITAACSGFIMGLVSASCHIRGGG FKNILVIGADALSRYVDWTDRGTCILFGDAAGAVVVQACDSEDDGLFSFDVNSNGDGSRHLNASIKQTKPDHELGSSNGSAVADFPPRSSSYSCINMNGK EVYRFAVSSVPETIESSLEKAGLTSANIDWLLLHQANKRIIDSVADRLKLPSERVISNLANYGNTSAASIPLALDEAVRSGKVKAGDTIAAAGFGAGLTW GSAIIRWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10024608 [exp]	0	1
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10020514 [exp]	11.9	0.8311
AT5G52410			unknown protein		Lus10026416 [exp]	20.5	0.7896
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10036574 [exp]	30.3	0.7665
AT3G62270			HCO3- transporter family (.1)		Lus10038060 [exp]	53.3	0.7691
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10033102 [exp]	69.7	0.7530
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10033567 [exp]	81.1	0.7487
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10036575 [exp]	82.5	0.7627
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	114.0	0.7455
AT5G02580			Plant protein 1589 of unknown ...		Lus10024432 [exp]	154.4	0.7131
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	187.6	0.7279

Compare expression of checked genes

Lus10024608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.