Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62730 459 / 3e-164 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032248 [exp] 575 / 0 AT1G62730 457 / 1e-163 Terpenoid synthases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119700 [exp] 476 / 2e-171 AT1G62730 407 / 4e-144 Terpenoid synthases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10024610 pacid=23161533 polypeptide=Lus10024610 locus=Lus10024610.g ID=Lus10024610.BGIv1.0 annot-version=v1.0 ATGAGAGGTACTTCAAACTTGCGATCAGCATTCTCCCACTGTGTGCAGCAAGTTCGAAACTATGACTACCATCACTACCTCTGCCTTCTCGAGCTCCCTG CCACCATGCGAAAGGCAGCATTTGCACTCCGCGCATTCAATGTTGAAACCGCCAAAGCCATGGATGTTGCTTCAGATCCCAGAATCGGTCTTATGCGCCT ACTGTGGTGGCAAGAAGCGATAGACAAGATATACGCTAACAAGTTGATCGAGCAGCCGGTGGCACAGGCGCTTGCATCGGTGGTCCATGACCATAAGATC AGCAAGGGATGGTTGAAACGGTCGGTCGAAGCAAGAAACAACGACGCGAGAAGAGAACCTCACGACATCCCGAATTCCATTTCGGAGCTCGAAAAATATG CCGAGGATACTGTATCTACGCTTCTCTACACGACCCTTCAATCCGGTGGGATTAGTTCAACTGTTGCAGACCATGCAGCATCCCATATCGGTAAAGCGAG TGGTCTTCTCTTGCTACTTAGATCGTTGCCGTATCATGCTAGCCGGAGTCGTCATGATTCGTACATACCGATCGAAGTAGCATCTAAACACGGTCTCTTA GTGAAAGAAGGCGGTCGCTCGTACATCCAACTGGATTCGAAGGAGGGAAGCTTGTCCGATGCGGTTTTCGAGATAGCGTCTGTAGCGAATGCTCATCTGC TGAAGGCTCGTGATTTGGCTGGTACCGTACCTGCTGAGGCTCGTCCGGTGCTCTTGCCATCAGTTCCGACTCAGGTTATGTTGGATTCTCTGAGTAAGGT GCAGTTTAATGTGTTTGATCCTAGGTTGTCTCAAGGAATTCTGGGGATTCCTCCTTTGTGGTACCAGATGAAACTCAAGTGGCATTCTTGGAGAGGGAAA TACTGA
AA sequence Show only first row Show all	>Lus10024610 pacid=23161533 polypeptide=Lus10024610 locus=Lus10024610.g ID=Lus10024610.BGIv1.0 annot-version=v1.0 MRGTSNLRSAFSHCVQQVRNYDYHHYLCLLELPATMRKAAFALRAFNVETAKAMDVASDPRIGLMRLLWWQEAIDKIYANKLIEQPVAQALASVVHDHKI SKGWLKRSVEARNNDARREPHDIPNSISELEKYAEDTVSTLLYTTLQSGGISSTVADHAASHIGKASGLLLLLRSLPYHASRSRHDSYIPIEVASKHGLL VKEGGRSYIQLDSKEGSLSDAVFEIASVANAHLLKARDLAGTVPAEARPVLLPSVPTQVMLDSLSKVQFNVFDPRLSQGILGIPPLWYQMKLKWHSWRGK Y

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	0	1
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	1.0	0.9018
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	3.7	0.8467
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	7.1	0.8241
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10031661 [exp]	7.3	0.8219
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	8.3	0.8399
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10037152 [exp]	8.7	0.7520
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	11.7	0.8303
AT3G58610			ketol-acid reductoisomerase (....		Lus10022849 [exp]	12.0	0.8109
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	13.5	0.8168
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	14.4	0.8136

Compare expression of checked genes

Lus10024610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.