Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62530 86 / 4e-18 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) AT1G12120 85 / 2e-17 Plant protein of unknown function (DUF863) (.1) AT1G26620 53 / 5e-07 Plant protein of unknown function (DUF863) (.1) AT1G69360 49 / 6e-06 Plant protein of unknown function (DUF863) (.1) AT1G13940 49 / 8e-06 Plant protein of unknown function (DUF863) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036807 [exp] 49 / 7e-06 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 49 / 8e-06 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10030419 [exp] 46 / 9e-05 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10026640 [exp] 45 / 0.0001 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112000 [exp] 118 / 9e-28 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.001G121200 [exp] 117 / 2e-27 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.008G092800 [exp] 48 / 2e-05 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [flax] [poplar] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Lus10024611 pacid=23161646 polypeptide=Lus10024611 locus=Lus10024611.g ID=Lus10024611.BGIv1.0 annot-version=v1.0 ATGCTGATGCGAGGGGATTTCGATTTGAATGCGGTGCAGACTGATCCAGTTGAGCTGCTTGTGCGGCAGGCATTGCTGAAACAGGAGGCTGTCTTTGGCC AGCAGGTCCATGAGCTCCATCGTAGGTCGAGCACACGAAGATCGCTCGGTATGGTTGGTAACGAGTTTGATCATAGCTACAATTCGAGGAATGTGAAAGC GCGGTCATCTTGTTTACCACCGAGAGATGCCACGAGATATGAATTGCTTGCCAAAGATGCAAGATTTTCAGCACTTGCAGAGGTACGGTCTGGATACCCT TTGAAGCAGGAGATAGTAGTAGAGGATTCGAAACGTGTAGGTTATGCTTCTTCTCGCCCTAGATCTGTCAGTCTCCAGCTTTCTGCCGATGACTTTATTC GTCGGTTGGGGGATGACCTTCGAGCCGAAGGAAGTGTTCGCAGCGATTCTTTTATGAATAGGGAGGAGGTAAAGCTCTCTCTTGGTGCTGGTCATCGCTC TAGAATGCCCAAATCAAGCACTCAGTTTGATTATACGAAGAATTCAGTGGTGGTGATTGACTTAGAGGACCCGATTCGAGATGATTTTGTGAAATTCAGT AGAATGCCTGGTGTTTTTCATGGTAGTAGTATGCAAAGCACTTGGCTTGATAGGCACAGGAATCTGAAGAGTGCAGTAGTGATCGATTTAGAAGACTCGG TCTACAAGAATAAGCGCTCGATTGATATGGTCGTGATCGATTTGGAAGATTCACCCGAAATCAATAATGATGATGTTTCTGCCAAAGGCCAATGGTTAGC AGATTCTGTGAGAGGGAATCTGGATCTTAATGAAGTTTACCAAGAAGGTAATGCAGCAGCAAATCGTACTCTTTTCGATCTTAACGTAGATTGTGAGAGC ACGGAGTTCGGGACGGAGAAGGAGTGTGCTGCAAGAAACAATAGTGGTAAGTGCGAGATTGATAATAATAATAATAATAATAATAGCCTCGTCCAGTTGA AGTCGAAGCCTCTCCTTGATGATTTGAACCACATGCCTACGGGGAATGGAGAAACAAGTACTGGTACGAGCGGGGTGGAAGAGGATCAGGATCGAGTTTC GTTGTCGATGGAAGAGAATGGAAACAAGTCGCCCGCTTCATGCAAGTCCTGCATTTCGGACAATGATTCGAGGACTCAATATCAGTCGAACATAAATAAA TGCCTCGAGATCAAGCAAGAAGAAGATCCGGTTAAAGTTGACACATTGATCAAAAGAGCAGCTGTGTCACTGCTCTGTTTAGCCCTGGACGACGATTCCC CTCCTCCATCCAAGAAGGAGAAACCACAGCACTCTCTCGATTCGTACGAGGTGATTGCGATGAATCTAGAACATAACATCGACGTGGAGGACTCTGCATC GTCAGGGGCGTTCGAGGTGGACTTTGCACCGGAGGATCAGGGATCTAAGTGGAAGAGAGGGAGGAGGCTGAAGGATTTCCAGAGGGAGATATTGCCTTGT CTGGCATCGCTTTCGAGGCACGAGATTCGCGAGGATATAAATATATTGGAAGGGGTGTTGCGTTCGAGGGAGTATCGGAGAATGCAGGCCATGGCTGGCG GAGGTGGTCAGCAGAACGAGGTGAAACGAAAACGAGCCAGACGAAATGGTAATAAGCCTGCATGA
AA sequence Show only first row Show all	>Lus10024611 pacid=23161646 polypeptide=Lus10024611 locus=Lus10024611.g ID=Lus10024611.BGIv1.0 annot-version=v1.0 MLMRGDFDLNAVQTDPVELLVRQALLKQEAVFGQQVHELHRRSSTRRSLGMVGNEFDHSYNSRNVKARSSCLPPRDATRYELLAKDARFSALAEVRSGYP LKQEIVVEDSKRVGYASSRPRSVSLQLSADDFIRRLGDDLRAEGSVRSDSFMNREEVKLSLGAGHRSRMPKSSTQFDYTKNSVVVIDLEDPIRDDFVKFS RMPGVFHGSSMQSTWLDRHRNLKSAVVIDLEDSVYKNKRSIDMVVIDLEDSPEINNDDVSAKGQWLADSVRGNLDLNEVYQEGNAAANRTLFDLNVDCES TEFGTEKECAARNNSGKCEIDNNNNNNNSLVQLKSKPLLDDLNHMPTGNGETSTGTSGVEEDQDRVSLSMEENGNKSPASCKSCISDNDSRTQYQSNINK CLEIKQEEDPVKVDTLIKRAAVSLLCLALDDDSPPPSKKEKPQHSLDSYEVIAMNLEHNIDVEDSASSGAFEVDFAPEDQGSKWKRGRRLKDFQREILPC LASLSRHEIREDINILEGVLRSREYRRMQAMAGGGGQQNEVKRKRARRNGNKPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12120			Plant protein of unknown funct...		Lus10024611 [exp]	0	1
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10041472 [exp]	7.9	0.8973
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	11.0	0.9233
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	14.8	0.9163
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10038863 [exp]	17.5	0.9120
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	18.8	0.9062
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	19.0	0.9035
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	20.4	0.9132
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	24.9	0.9114
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	27.6	0.9095
AT1G21480			Exostosin family protein (.1.2...		Lus10018930 [exp]	29.7	0.9025

Compare expression of checked genes

Lus10024611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.