Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22540 1055 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 980 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT4G08180 815 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 785 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT1G13170 759 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT2G31030 592 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT3G09300 186 / 2e-51 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 181 / 1e-49 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 178 / 9e-49 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT1G77730 162 / 5e-45 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032251 [exp] 1396 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10028087 [exp] 820 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 803 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 778 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 752 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10025695 [exp] 707 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10035967 [exp] 640 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024386 [exp] 186 / 2e-51 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 183 / 2e-50 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121700 [exp] 1158 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.003G111600 [exp] 1148 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.005G172900 [exp] 828 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 816 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 781 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.019G015111 [exp] 763 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.008G182766 [exp] 277 / 1e-86 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 194 / 3e-54 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 67 / 2e-11 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 59 / 7e-09 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10024613 pacid=23161602 polypeptide=Lus10024613 locus=Lus10024613.g ID=Lus10024613.BGIv1.0 annot-version=v1.0 ATGAGGGTGAAGGAAATGCACCCACTCTGCTGCATCTCCCTGGAGTCGGCCGGCGGCATCGGCGACCAGTCGCCGGAGCTCTCCGCCACGTTGACCAGGG CGAGATCCCTTCCGGCGGCGCTGATGGGCGGATCTATGAGCAACGGCGCGTCGGAGGAGTCATCATCGTCGGCGGCGACGGTTGCCGGAGTTCTCTTCAA GTGGACCAATTACGGCAAAGGCTGGAGATCGCGGTGGTTCTTGCTTAAAAACGGTGTTTTATCCTACTCCAAGATCCGCCGCCCCGAGAATCTGAATCTC CTCGCCCTGAACGAGGACGTGAGGCTGATCGGCGCGATTTCCACCAGCCGGTTGCAGAGGATGAACAGCCGGCGGAAGCCGGAGAAGAAGACCGTCGGCA TTGTTCATCTCAAGATTTCGTCGTTTCGGGAGAGCAAGTCGGATGATAGGAAGTTCTACCTATTCACAGCTACGAAGACGCTTCACTTGAGGACGGATTC GAAGAGGGACAGGGTAGCTTGGATTCAGGCATTGGTGTCTGCTAGGAACTTGTTTCCTTCGAGGTCGTTGAAAGACGGTATCTCCCTCACCGTGCCAAAG GATTTATCGGTCTCGACTGACAAGCTCAAGAAGCGGTTAGTTGAGGAAGGGGTGAATGAGAGCTTGGTTAAGGACTGCGAAGATATCATGCTATCAGAAT TCTCCGAATTGAATGCTCAGCTCAAGGTTGTTTGTGAAGAACGGTCGAGTTTGTTCGACACTCTAAGACAATTGGAGGCTGCGAATATTGAAATCGAACA CTCGGGAATTCAAGATGGTCCATACCAGTTATCGAAGCACGAATTGTCAAATTTAGGACCTGGAAAATACAGCGAATGTAGCACAACCGAATCATCAGAT GATATCGAGAAACCGGACCTGGAGGAAGTTTCAGATGAGGAGGAGCACTCTTTCCACGACACGAAAGATTACTTCACTGATGGGTCTCTAACAGAAGTTG CAGGAGGCCACTCAGCGAAGGATAATAGTAGGCAATCGAACCAATCTAATTGTGATGAGAAAATGCTCTCGCTATTTAACCCCGGATACCCTGTCGTTGA ACGGAGGACGAAGCTTCCAACCCCGGTCGAAAAGGAGAAAGGGGTCAGCCTTTGGTCCATGATCAAGGACAATGTCGGGAAGGATCTCACACGTGTTTGC CTCCCGGTCTATTTCAACGAACCGATATCCTCTCTTCAGAAATGCTTCGAGGACTTGGAGTACTCCGATCTCTTGGACAAAGCCTACGAATACGGAAAAG CAGGGAACAGCTTGATGAGGATTCTGTACGTTGCTGCGTTTGCTGTGTCGGGTTATGCTTCCTCCGAGGGTCGCAACTGCAAGCCGTTTAATCCTTTGCT TGGAGAAACATATGAAGCCGACTATCCAGACAAAGGACTTCGCTTCTTCTCCGAGAAGGTTAGTCATCATCCAACACTCATTGCCTGCCATTGTGAAGGT AGAGGGTGGAGGTTTTGGGCTGACAGCGATATTCACTCGAAATTCTGGGGGCAATCGATTCAACTCGACCCTGTTGGAGTTCTGACACTCGAGTTTGACG ATGGTGAAAGATTCCAGTGGAGCAAGGTTACTACCGCGATTCGCAATCTCATTCTTGGAAAAGTATATTGTGATCACCATGGGATGATGAATATAACCGG AAATCGGGATTATTCTTGCAAGTTGAAGTTCAAAGAACAATCGCTTCTTGACAGAAATCCTCATCAGGTTAATGGGTTTGTGGAGGATGTTACTGGGAAG AAGGTTGCCACAGTGTCTGGAAAATGGGATGAAAGCATGCATTATAGCATCCTTGACGCGCATGGAAAGTCTAGGAATTCTAACCTGGCAACCAACTTGC TGTGGAAGAGTACAAAGCCACCTGCGAATCTCACACGTTACAACTTGACATCGTTCGCCATAACAGTGAACGAATTAACACCAGGACTGAAGGAGAAGCT CCCTCCAACAGATTCCAGGATGAGACCAGACCAGCGGCATCTCGAAAATGGGGAATACGACAAGGCGAACGTAGAGAAACAGCGGCTGGAGAAGCGACAA CGAATGTCAAGAAAGCTGCAAGAACACGGATGGAAACCGAGATGGTTCGAGAGAGAAGGCCACAACGGACCTTTTCGCTACAAAGGTGGGTACTGGGAAG CGCGAGAGCATAGCAACTGGGAAGGATGCCCTGACATATTCGGGGAGTTCAACGAAGATCTCTCCGAATCCAAGTGA
AA sequence Show only first row Show all	>Lus10024613 pacid=23161602 polypeptide=Lus10024613 locus=Lus10024613.g ID=Lus10024613.BGIv1.0 annot-version=v1.0 MRVKEMHPLCCISLESAGGIGDQSPELSATLTRARSLPAALMGGSMSNGASEESSSSAATVAGVLFKWTNYGKGWRSRWFLLKNGVLSYSKIRRPENLNL LALNEDVRLIGAISTSRLQRMNSRRKPEKKTVGIVHLKISSFRESKSDDRKFYLFTATKTLHLRTDSKRDRVAWIQALVSARNLFPSRSLKDGISLTVPK DLSVSTDKLKKRLVEEGVNESLVKDCEDIMLSEFSELNAQLKVVCEERSSLFDTLRQLEAANIEIEHSGIQDGPYQLSKHELSNLGPGKYSECSTTESSD DIEKPDLEEVSDEEEHSFHDTKDYFTDGSLTEVAGGHSAKDNSRQSNQSNCDEKMLSLFNPGYPVVERRTKLPTPVEKEKGVSLWSMIKDNVGKDLTRVC LPVYFNEPISSLQKCFEDLEYSDLLDKAYEYGKAGNSLMRILYVAAFAVSGYASSEGRNCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPTLIACHCEG RGWRFWADSDIHSKFWGQSIQLDPVGVLTLEFDDGERFQWSKVTTAIRNLILGKVYCDHHGMMNITGNRDYSCKLKFKEQSLLDRNPHQVNGFVEDVTGK KVATVSGKWDESMHYSILDAHGKSRNSNLATNLLWKSTKPPANLTRYNLTSFAITVNELTPGLKEKLPPTDSRMRPDQRHLENGEYDKANVEKQRLEKRQ RMSRKLQEHGWKPRWFEREGHNGPFRYKGGYWEAREHSNWEGCPDIFGEFNEDLSESK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10024613 [exp]	0	1
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	1.0	0.9453
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10006934 [exp]	8.9	0.7959
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	9.2	0.8292
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	9.4	0.8446
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	9.6	0.8281
AT4G19450			Major facilitator superfamily ...		Lus10033271 [exp]	16.3	0.7781
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	16.9	0.8247
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	20.7	0.8105
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	20.8	0.8121
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	22.0	0.8175

Compare expression of checked genes

Lus10024613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.