Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12110 637 / 0 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT2G26690 494 / 6e-170 Major facilitator superfamily protein (.1) AT3G21670 429 / 3e-144 Major facilitator superfamily protein (.1) AT3G54140 407 / 4e-136 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 390 / 2e-129 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G68570 375 / 3e-123 Major facilitator superfamily protein (.1) AT2G02040 374 / 6e-123 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G59740 352 / 2e-114 Major facilitator superfamily protein (.1) AT1G62200 343 / 6e-111 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 328 / 1e-105 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032252 [exp] 1021 / 0 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10039782 [exp] 486 / 2e-166 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10018553 [exp] 479 / 1e-163 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10030081 [exp] 451 / 2e-152 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10035317 [exp] 423 / 4e-142 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 423 / 5e-142 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030006 [exp] 422 / 7e-142 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 421 / 5e-141 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 419 / 2e-140 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111500 [exp] 774 / 0 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.002G225500 [exp] 459 / 5e-156 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.014G157500 [exp] 449 / 4e-152 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042400 [exp] 416 / 2e-139 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 413 / 2e-138 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 412 / 6e-138 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 404 / 8e-135 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 400 / 3e-133 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 397 / 3e-132 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 389 / 9e-129 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024614 pacid=23161545 polypeptide=Lus10024614 locus=Lus10024614.g ID=Lus10024614.BGIv1.0 annot-version=v1.0 ATGAATCTGCAGTCTCAAACTCAAAGCTCCACCCTACCAGATGCCTGGGACTACAAGGGCCGGCCGTCCGTCCGATCGAGATCCGGCGGCTGGAGCAGCG CCGCCATGATTCTCGGCGGAGAGTTATGTGAGAGGCTGACGACGTTAGGCATCGCCGTTAACCTGGTCACTTACCTCACCGGAACTATGCATTTGGGCAA TGCCACCTCAGCTAACACCGTCACTAACTTCCTCGGTACCTCCTTCATGCTCTGCCTCCTCGGCGGCTTCCTCGCCGACTCCTTCCTCGGCAGGTACCTT ACTATTGCCATCTTTGCCACAGTTCAAGCAACGGGAATAACAATCCTGACAATCTCGACGATAATCCCATCTCTCCGGCCACCACCGTGCCAAAACGGCA CCGTATGCATTCCAGCCAGTAGCAAGCAGCTGCTTGTCCTCTACCTAGCCCTGTACATGACAGCTCTAGGCACTGGCGGGGTAAAATCGAGCGTCTCGGG TTTTGGGTCGGACCAATTCGACGACTCGGATCCGAGGGAGAAAAAACAGATGACTAAGTTCTTCAATTGGTTCTTCTTTATGATCAACATCGGCGCATTG GCGGCTGTCACGGTCCTGGTGTACATCCAGGACCACCAGGGCCGTCGATATGGCTACGGGATCTGCGCGATAGCTATCCTGACGGCCCTGATGACTTTCC TGTCGGGTACGAAGAGTGTCGACGTGGCGGCATGGAGGAAACGACACCTGGAGCTTCCGTCGGACCCCGGGATGTTGCACAATGTGGATGACATTGAGGA AGGGAGTAAGAAGAAGAAGCCTATGCTTCCTCACAGCAAGCAATTCAGGTTTTTGGACAGGGCAGCAATCAAGGACTCACAATCCACGTCAGCAAACAAG TGGACACTATCAACCCTAACTGACGTGGAGGAGGTCAAAATGGTCATTCGGATGCTACCCATTTGGGCAACCACCATCATCTTCTGGACTGTCTACGCCC AGATGACGACATTCTCCGTCTCCCAAGCCACCACCATGGACCGCCACATGGGCAGCTTCGAAATTCCCGCCGCCTCCCTCACCGTCTTTTTTGTGGGCAG CATCTTGCTCACGGTCCCGGTCTACGATCGGGCCATTGTCCCCGTGACACGTAGACTCCTCAACAACCCGCACGGCCTCACCCCTTTGCAGCGAATCGGG GTGGGCCTGGTGATGTCCATCATGGCCATGATTGCTGCAGCTCTGACGGAACTGAAACGAGTCAGAACAGCACGGAATCATGGTTTGATCGATGACTCGA CCACCACGGTCCCGATGAGCGTGTTCTGGTTGGTCCCGCAGTTTTTCCTGGTTGGGTCGGGGGAGGCATTCACGTACATTGGCCAGCTCGATTTCTTTCT TAGGGAGTGCCCCAAGGGGATGAAGACGATGAGCACGGGGCTCTTTCTGAGCACGCTCTCGCTAGGGTTTTTCCTGAGCTCGTCGCTTGTGACGATTGTT CACAAGGCGACGACCAAGAAACCCTGGCTACCGGATAACATGAACAAAGGGAGGTTGTTCGATTTCTACTGGTTGTTGGCGATTCTGAGCGCGCTGAACT TTTTGGTGTACTTGGTATGTGCGAGGTGGTATGTTTACAAGGAGAAGCGCCTCGCGGAGGAAGGGATCGTATTGGAAGAAGACGACGGGCCCGCCATGCA TTGA
AA sequence Show only first row Show all	>Lus10024614 pacid=23161545 polypeptide=Lus10024614 locus=Lus10024614.g ID=Lus10024614.BGIv1.0 annot-version=v1.0 MNLQSQTQSSTLPDAWDYKGRPSVRSRSGGWSSAAMILGGELCERLTTLGIAVNLVTYLTGTMHLGNATSANTVTNFLGTSFMLCLLGGFLADSFLGRYL TIAIFATVQATGITILTISTIIPSLRPPPCQNGTVCIPASSKQLLVLYLALYMTALGTGGVKSSVSGFGSDQFDDSDPREKKQMTKFFNWFFFMINIGAL AAVTVLVYIQDHQGRRYGYGICAIAILTALMTFLSGTKSVDVAAWRKRHLELPSDPGMLHNVDDIEEGSKKKKPMLPHSKQFRFLDRAAIKDSQSTSANK WTLSTLTDVEEVKMVIRMLPIWATTIIFWTVYAQMTTFSVSQATTMDRHMGSFEIPAASLTVFFVGSILLTVPVYDRAIVPVTRRLLNNPHGLTPLQRIG VGLVMSIMAMIAAALTELKRVRTARNHGLIDDSTTTVPMSVFWLVPQFFLVGSGEAFTYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFLSSSLVTIV HKATTKKPWLPDNMNKGRLFDFYWLLAILSALNFLVYLVCARWYVYKEKRLAEEGIVLEEDDGPAMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	0	1
AT4G02830			unknown protein		Lus10014664 [exp]	2.2	0.9570
AT4G31830			unknown protein		Lus10010682 [exp]	2.8	0.9547
AT5G49525			unknown protein		Lus10017078 [exp]	4.6	0.9550
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	5.0	0.9706
AT2G20690			lumazine-binding family protei...		Lus10039826 [exp]	5.2	0.9512
					Lus10015413 [exp]	6.3	0.9596
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	6.3	0.9574
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	8.4	0.9283
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10000411 [exp]	10.6	0.9393
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	11.6	0.9397

Compare expression of checked genes

Lus10024614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.