Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032255 [exp] 330 / 1e-114 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10024702 [exp] 122 / 3e-34 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 108 / 2e-28 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10014161 [exp] 104 / 6e-27 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10032315 [exp] 103 / 8e-26 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10038470 [exp] 96 / 2e-24 ND / Lus10038468 [exp] 96 / 2e-24 ND / Lus10014229 [exp] 94 / 2e-23 ND / Lus10026868 [exp] 93 / 2e-23 ND 41 / 6e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 66 / 7e-13 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 40 / 0.0003 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 39 / 0.0009 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024617 pacid=23161601 polypeptide=Lus10024617 locus=Lus10024617.g ID=Lus10024617.BGIv1.0 annot-version=v1.0 ATGAACTATGCTGCCTCACATGGTGTTCACCACTTAACCTTACGTACTCATGGTTATGCGGATGATGGCCCACTGCTCCAAACCCTTGAAGCAGTCTGCA CTTGTTATCGATCTCTGGAAATTCTCGAATTAGACAGTGTACGTTTCGTTGAGACGGTTTCTGCATCGTGGTCTCGTTTGCAACAGCTCAAAGCTCTTAC TCTGACTTGGTGCTACTTTGATGGATCACATGATGGTTTTGCTGGTTTTCTCAAATTGGAGAACCTGAAGCTGATCAATTGCTCTCAAACCAGTCGTCCG ACTCTTAAAATACATGGAGCCCGACTGCTTAACTTGGAGATACACAGGGTATGCTTTATCAGTATGGAAATTGTCACTCCCAAGCTCCAATCTTTTTGCT TTGAGAATGTTTACTACGTGCTACCAGATTTCTCCAAGTTAGAATTTCCTTACCTTAATCATGCTTACATCGACTTGTTGGGAAACGCGGATGGTTATTT AGACGCTTTTTTATGA
AA sequence Show only first row Show all	>Lus10024617 pacid=23161601 polypeptide=Lus10024617 locus=Lus10024617.g ID=Lus10024617.BGIv1.0 annot-version=v1.0 MNYAASHGVHHLTLRTHGYADDGPLLQTLEAVCTCYRSLEILELDSVRFVETVSASWSRLQQLKALTLTWCYFDGSHDGFAGFLKLENLKLINCSQTSRP TLKIHGARLLNLEIHRVCFISMEIVTPKLQSFCFENVYYVLPDFSKLEFPYLNHAYIDLLGNADGYLDAFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024617 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	1.7	0.8694
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	2.4	0.8118
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10005065 [exp]	4.2	0.7270
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	4.6	0.7650
					Lus10030116 [exp]	4.9	0.7542
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016891 [exp]	15.4	0.6772
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	24.6	0.6870
AT3G59850			Pectin lyase-like superfamily ...		Lus10002125 [exp]	28.1	0.7473
AT5G05340			Peroxidase superfamily protein...		Lus10000626 [exp]	28.8	0.6814
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	32.2	0.6725

Compare expression of checked genes

Lus10024617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.