Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62510 54 / 2e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G12090 50 / 8e-08 ELP extensin-like protein (.1) AT4G12510 47 / 4e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12520 47 / 4e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G00165 47 / 4e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT4G12480 47 / 1e-06 PEARLI 1 1, PEARLI 1, pEARLI1 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12500 46 / 2e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G45180 45 / 2e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12490 46 / 3e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G22460 44 / 1e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024623 [exp] 89 / 2e-22 AT4G12490 152 / 2e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032257 [exp] 89 / 3e-22 AT4G12490 157 / 1e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032258 [exp] 89 / 9e-22 AT4G12500 92 / 5e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024620 [exp] 85 / 9e-21 AT4G12490 150 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024621 [exp] 84 / 2e-20 AT4G12490 147 / 2e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004346 [exp] 76 / 1e-17 AT4G12520 161 / 2e-52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032259 [exp] 75 / 1e-17 AT4G12520 133 / 2e-41 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10028929 [exp] 68 / 1e-14 AT4G12520 147 / 9e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032260 [exp] 66 / 9e-14 AT4G12520 155 / 5e-50 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158400 [exp] 69 / 6e-15 AT1G62510 132 / 1e-40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G111400 [exp] 68 / 8e-15 AT1G62510 93 / 7e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121900 [exp] 67 / 2e-14 AT1G62510 99 / 5e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121800 [exp] 43 / 1e-05 AT1G12100 143 / 5e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024622 pacid=23161586 polypeptide=Lus10024622 locus=Lus10024622.g ID=Lus10024622.BGIv1.0 annot-version=v1.0 ATGGGAAGGTTGAGGTTGATGCCGAGAATGTTGGCTTTAATGGCAGTGCAAAGGCAAACAGAAGCATCGAGATCAGCAAGTCCATTAATCAAGCTACAAC AAGGTTGTGCCGGTGTGCTTCCAATCCTGATATTGAGCAAATTGCCAAGCACATCAGCACAAACACCCAACTTGAGTGCATCGATGGGGCATTTCCCACT TGAAGAGCTAGGAGTTGGGGTCGGGTTGGGGTTACTAGGTGTTGGTGTTGGGTTTGTAGGTGTAGGAGTTGGTGTAGGGTTTGGGTTTGTAGGAGTTGGT GTAGGGTTGGGCTTAGTAGGTACTGTTGGTGTGGGGTTTGGATTCGGGTTCGGAGTAGGTGTTGGTTTAGGGTTTGGGTTCGGAGTAGGGCAACCACCAC CGCAATGTGCAGAGGCCATCGAGAAGAAGAGAAGGTTGAGTGCAAGGAAGAGAGCCAATGTTGAGTTTGCTTTGGAAGCCATTGGTTTATTTGGAGGATG GATGTTGAGGTCTGGAAGAAGAGTGCTTGGTGAGTTGAGAAGGAACCATGGGATGGGGGGGTTTATAGGGCTTTAA
AA sequence Show only first row Show all	>Lus10024622 pacid=23161586 polypeptide=Lus10024622 locus=Lus10024622.g ID=Lus10024622.BGIv1.0 annot-version=v1.0 MGRLRLMPRMLALMAVQRQTEASRSASPLIKLQQGCAGVLPILILSKLPSTSAQTPNLSASMGHFPLEELGVGVGLGLLGVGVGFVGVGVGVGFGFVGVG VGLGLVGTVGVGFGFGFGVGVGLGFGFGVGQPPPQCAEAIEKKRRLSARKRANVEFALEAIGLFGGWMLRSGRRVLGELRRNHGMGGFIGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024622 [exp]	0	1
AT5G13920			GRF zinc finger / Zinc knuckle...		Lus10020975 [exp]	17.0	0.6271
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10008041 [exp]	31.9	0.6597
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10000709 [exp]	34.5	0.6632
					Lus10017763 [exp]	38.5	0.6523
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Lus10016035 [exp]	71.4	0.6021
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10008931 [exp]	103.0	0.6195
					Lus10040545 [exp]	119.8	0.6135
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	175.3	0.6125
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	193.0	0.5936

Compare expression of checked genes

Lus10024622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.