Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63640 958 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 808 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 660 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 636 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 526 / 7e-168 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT5G27000 521 / 6e-167 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 506 / 2e-161 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 480 / 2e-151 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 447 / 8e-140 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 338 / 2e-98 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032264 [exp] 2077 / 0 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 1340 / 0 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 541 / 1e-172 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 534 / 1e-171 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 503 / 4e-161 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 504 / 9e-161 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10001306 [exp] 494 / 3e-156 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10018049 [exp] 468 / 9e-147 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 463 / 5e-145 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127800 [exp] 1094 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G104000 [exp] 1071 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 829 / 0 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 813 / 0 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 542 / 2e-173 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 533 / 4e-170 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.014G125700 [exp] 523 / 8e-168 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 523 / 2e-167 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 522 / 4e-167 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 520 / 3e-166 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10024628 pacid=23161594 polypeptide=Lus10024628 locus=Lus10024628.g ID=Lus10024628.BGIv1.0 annot-version=v1.0 ATGAGCGCTCAGTCTCAAAGGAGTATAACCGAGATGGGAATTTATGCTAGATTCGGTAGCATGGCTCGGCCAAAAGAAGGAAGGCTTGAAGACAATGGTT ATGGTACTGTGAAGTCACTAGTTGAGTGGTTGAACAATCTGTTCCCCGAGTTGAATTTGCCGTCTGAAACATCAGAGGAGGATCTAAGAGACTGTTTGAT TGATGGCACTGTCTTGTGCGGCATCCTGAACAAACTGAGGCCTGGTGTGATTGACATGAGGACCAATTTCAGGCCTATCTTCGGTGTGGATTACCTCAAA AGGTTTCTAGATGAAATGGACGAAATGGGCCTTCTTAGGTTTGTAATTGAAGACATACAACAGGGTTATATGCTGCCTGTACTTCAGTGTCTTGGAACCC TTAAGGAGAGTTTAGAAAGTGCAGAGATTCATAATGGTTCAAGAAGGAGATTGAATGTAAAGGAGATTGAGCTTTGTAACAGAATTGATCATTCATCATT CAACTTGGAGAACTCTGCTATTAATGGTGGAGAGAAGCAACAGACTTCTATTGATGGTGCTAATCGATATGTGGTTTCTCTTTTAGAGGCATGTGCAAGA AATAAGATGTCCAAGGTGTTAGAGCAGGGTTTATCTGCTGATCTCTCTGATGACCATATCGCCGAGGTGATAAAGTTTAGTAGTGTGGATACTATATCAA CCTGCACATTGTTCAGTTTTGTGAACCAGCTACTCGATGACAGCATCTTCAAAAAGGATGGTCATGTTCATCATATGGCAAGGATGTTGACGCAAGTCAT CCAAGTTATTGAACAAAGAGTGTCTGCTCAAGCAGAGAACTTGAAAGATAAAAATTATCTTTGTAGTGTTCGCTCTGAAAAGTACCAGTCAAGAGTAAAG GTAACTGAGACCCTTGCTTCTGGTACCGCAGAAGAAATCGAGGTTTTGTTTTCACACCTGAAACAGGCAAAGATTGAAAAAACTGAAATAGATGAGACAG AACAGGATCTGAATAATAGTTTGAAGGAAGAGAAAAATTGTCTGGAGAACAAGAAGGCTGCACTGAATCGCGAATTGGAGGCAATGAAGAAGACGCATGA AGAGCATTGCTTACAGCTAGAGGCACAAGCTAAGGAAACAAAACAAGTATTGGAAAAGAGGTCACATGAACTCGAGCGCTTTTTGATGGAGTCACAGAAG AGGGTGAAACAACTTGAGTCCTTCACAGAATCAAAATCTGAAGGGTGGAAGAAGAAAGAGGAAACTTTTAAAGTCTTCCTTGACAATCAGCAGAGAGCCT TACAGGAAATGAGAGCAGCTTATGCATCTCTCAAACAAGAAGTTATGCTGACAAAGAGGAGATACGCAGAGCAGTTCTATGGCATGGGAGTGGAGCTTGA AGGAGTAGTGCATGCTGCTGAAAATTATCATTCGGTTCTTGCAGAAAATAGAAAATTATACAACGAGGTTCAGGACTTGAAAGGTAATATAAGAGTATAT TGTAGGGTGAGACCGTTCCTTCCCGGCCAAAGTAAGAAACTGACAAGCATAGAGTATATCGGCGAAAATGGTGAATTACTCGTCTCCAATCCTACCAAGC CAGGGAAAGACACACGTAAAACGTTCAAATTTAACACGGTTTATGGTCCATCAGCTAGTCAAGAGGAAGTGTTTTTGGATACTCGGCCATTAATTAGGAC CGTTCTTGATGGATTCAATGTATGTATCTTTGCTTATGGTCAAACTGGATCAGGAAAGACATATACAATGAGCGGGCCTAGTATTTCATCAAAAGAAGGT TGGGGAGTCAATTATCGAGCATTGCACGATCTTTTTCATATCGCTCAAAGCAGGAAAGGCTCAATGACATATGAGATTGGGGTTCAGATGGTCGAAATAT ATAACGAACAAGTTCGTGACCTTCTCACATGTCAAGCTGTCCCTGATGCCAGCATGCATCAAGTTACATCGACTGAAGACGTCTTGGAGTTAATGAACGC TGGATTAATGAACCGTACTGTTAGTGCTACTGCGTTAAACGAACGGAGTAGTAGATCACACAGCGTACTCACCATTCATGTCCGTGGAATGGATTCGGAG ACTGGTACGCTATTACGAGGGAATCTACACTTGGTAGATCTTGCCGGTAGTGAAAGGGTGGATCGGTCCGAAGTGACTGGAGACAGACTAAGAGAGGCAC AACACATAAACAAGTCCCTCTCTGCACTTGGAGATGTGATATTTGCCCTTGCACAGAAAAGCCAACATGTACCGTACCGAAACAGCAAACTTACTCAAGT GCTTCAGAGTTCTCTAGGTGGTCAAGCCAAGACCCTTATGTTTGTGCAGCTTAATCCTGATCCGGATTCGTATTCTGAAACGGTGAGCACTTTGAAGTTT GCTGAGAGAGTTTCTGGAGTTGAGTTGGGAGCTGCAAGGAGCAATAAAGAAGGAAGAGATATTAGAGAACTTATGGATCAGGTCACGTCACTGAACGAAA CCATTGTGAGGAAAGATGAAGAGATTGAGCGGCTGCAGCTGTTCAAGATAAATACCAATAGTCCGAAGTCTACCAATAGCCCGAAGTCTGTCCGGTTTGA GTCCTCTCCTCGAAGATTTTCAGTCGGAAATCCGGGGTACAGTCCTAACTCACCTGGAAGGAGAAGAACCACACGACGGTCGGATAGAGAAATGGACATC TGCTCCGAGTATAGCCCCAAGTCTCCCGGAAGGAAAACTTCACCACCGTTTTCCAAAGAACGGGACATATGCTCCGAATACGGTGGAAGGCGTTCGGATA TTCGTTCACTTCCAACGATGGATGAGTTAAAGCGTCCTCCTCGTAGGGCTAGTTTTGCACATTCAAAGCCAGTGATCCCGCCAAGGCGGGCTCACGAGTC CAGAATTTACGTAGCAAAGGCATCCCAGAAGGATTCCAAAGAAGACATTGAGCTCTTTGGGTTCGGAAGTGGAGATTCCGACGAGAGAATAAGTGACATC TCGGACGCTGGCCTTTCCATGGGACACGAGACTGATGGTTCCTCAGGAAGTGCAGTGGAATACACTCTTTTCCCTGAATCTGCAAACCCACCAACTGAAT CAACTAGCTTGCGAACAAGGGTTTCGAACTCGGTAGAGCCCTCCAGATCATCATCTAGTAACATTGCACTAGCTTCAAGACCGACAGGGAGACAGCCTGA CAATCTGGAGAGGCGGATGGTTGCTACTACATCTAAGCTTCCGAAACCCTCTCCAAAGACGGCACCACAGACGAGATTATCTCGCTTATCATTGCATAAT AAGCCAGCTACTACGACATCAAAGTTCCAATCAACTTCCATTAATCTCATGGAAACTATTGATTTTTGGGGGATTTTGGGACTCAGATTAAAGGGTGGGA TATATACTAATGATCTTTTGTATAGAGAAGTTGATGGCGTGGGAGATCTTGAGGCTGTGATGAAGCCGTTGAACTATCCTCCTTTAGATGAAAGAAGCAC ACTTGACAAGTTTGCTGCCTATACAATCCTTCAGGCTGCCCAAGTAAAGTTCAACACCGATTGA
AA sequence Show only first row Show all	>Lus10024628 pacid=23161594 polypeptide=Lus10024628 locus=Lus10024628.g ID=Lus10024628.BGIv1.0 annot-version=v1.0 MSAQSQRSITEMGIYARFGSMARPKEGRLEDNGYGTVKSLVEWLNNLFPELNLPSETSEEDLRDCLIDGTVLCGILNKLRPGVIDMRTNFRPIFGVDYLK RFLDEMDEMGLLRFVIEDIQQGYMLPVLQCLGTLKESLESAEIHNGSRRRLNVKEIELCNRIDHSSFNLENSAINGGEKQQTSIDGANRYVVSLLEACAR NKMSKVLEQGLSADLSDDHIAEVIKFSSVDTISTCTLFSFVNQLLDDSIFKKDGHVHHMARMLTQVIQVIEQRVSAQAENLKDKNYLCSVRSEKYQSRVK VTETLASGTAEEIEVLFSHLKQAKIEKTEIDETEQDLNNSLKEEKNCLENKKAALNRELEAMKKTHEEHCLQLEAQAKETKQVLEKRSHELERFLMESQK RVKQLESFTESKSEGWKKKEETFKVFLDNQQRALQEMRAAYASLKQEVMLTKRRYAEQFYGMGVELEGVVHAAENYHSVLAENRKLYNEVQDLKGNIRVY CRVRPFLPGQSKKLTSIEYIGENGELLVSNPTKPGKDTRKTFKFNTVYGPSASQEEVFLDTRPLIRTVLDGFNVCIFAYGQTGSGKTYTMSGPSISSKEG WGVNYRALHDLFHIAQSRKGSMTYEIGVQMVEIYNEQVRDLLTCQAVPDASMHQVTSTEDVLELMNAGLMNRTVSATALNERSSRSHSVLTIHVRGMDSE TGTLLRGNLHLVDLAGSERVDRSEVTGDRLREAQHINKSLSALGDVIFALAQKSQHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDPDSYSETVSTLKF AERVSGVELGAARSNKEGRDIRELMDQVTSLNETIVRKDEEIERLQLFKINTNSPKSTNSPKSVRFESSPRRFSVGNPGYSPNSPGRRRTTRRSDREMDI CSEYSPKSPGRKTSPPFSKERDICSEYGGRRSDIRSLPTMDELKRPPRRASFAHSKPVIPPRRAHESRIYVAKASQKDSKEDIELFGFGSGDSDERISDI SDAGLSMGHETDGSSGSAVEYTLFPESANPPTESTSLRTRVSNSVEPSRSSSSNIALASRPTGRQPDNLERRMVATTSKLPKPSPKTAPQTRLSRLSLHN KPATTTSKFQSTSINLMETIDFWGILGLRLKGGIYTNDLLYREVDGVGDLEAVMKPLNYPPLDERSTLDKFAAYTILQAAQVKFNTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	0	1
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	2.4	0.9428
AT5G06820		SRF2	STRUBBELIG-receptor family 2 (...		Lus10012022 [exp]	3.7	0.8942
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	4.5	0.9104
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	6.7	0.9250
AT1G44760			Adenine nucleotide alpha hydro...		Lus10018190 [exp]	7.3	0.9272
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	9.4	0.8958
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10001517 [exp]	13.0	0.9101
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	15.2	0.8859
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018101 [exp]	15.6	0.8383
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	17.7	0.9024

Compare expression of checked genes

Lus10024628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.