Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74620 54 / 2e-09 RING/U-box superfamily protein (.1) AT5G05530 53 / 3e-09 RING/U-box superfamily protein (.1) AT1G55530 54 / 4e-09 RING/U-box superfamily protein (.1) AT3G60080 52 / 2e-08 RING/U-box superfamily protein (.1) AT3G19950 50 / 5e-08 RING/U-box superfamily protein (.1) AT3G13430 50 / 1e-07 RING/U-box superfamily protein (.1.2.3) AT2G40830 50 / 1e-07 RHC1A RING-H2 finger C1A (.1.2.3) AT5G56340 50 / 1e-07 ATCRT1 RING/U-box superfamily protein (.1) AT2G44330 48 / 2e-07 RING/U-box superfamily protein (.1) AT5G66070 48 / 4e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032265 [exp] 208 / 3e-70 AT3G19950 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10020258 [exp] 54 / 5e-09 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 53 / 1e-08 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002637 [exp] 52 / 2e-08 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10008106 [exp] 52 / 3e-08 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10040783 [exp] 51 / 3e-08 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10005275 [exp] 50 / 3e-08 AT2G42360 104 / 2e-28 RING/U-box superfamily protein (.1) Lus10043027 [exp] 49 / 4e-08 AT4G26400 57 / 3e-10 RING/U-box superfamily protein (.1.2) Lus10028406 [exp] 50 / 5e-08 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G122000 [exp] 51 / 9e-09 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 52 / 1e-08 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.005G108200 [exp] 52 / 2e-08 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 52 / 2e-08 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 50 / 7e-08 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 50 / 8e-08 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G245801 [exp] 49 / 9e-08 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 50 / 1e-07 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 50 / 1e-07 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.006G087800 [exp] 50 / 1e-07 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10024629 pacid=23161647 polypeptide=Lus10024629 locus=Lus10024629.g ID=Lus10024629.BGIv1.0 annot-version=v1.0 ATGGCAATGTCATACTTCCCCTCCTTCATCGCACTCGACCCCGACGGCGACGACGACCAACTCGAACCCGAACCCGAAGAGGATCTCTACAACGACAGTA CTATTACTCCTCATCTCCCCATGGAGACTGACGATATGCCGCCAAAACGCCGCCTCCAGCCGCTATTCGGCGGCCACCTGGACGACGCCGATGAACTGGA CCCCACCGTGGACTGCTCCGTTTGTTTGGACAGTATCCACTACCACAACGTCGACGACGACTACCCCGTGGGGTCCACGTCGGTGAAAAGGCTGGCGTGC TGCCACGTGTTTCACGAGGATTGCATCCGGCGCTGGCTCGCCGTGAAAGCTTCTTGCCCTCTTTGCCGTCTGCCCGTACCCTCCTCCGTTGGTGGGAGCT CCGCGTTACGGAGCTTTTTGTTTAGATGGTTTTGTGTTGATTAA
AA sequence Show only first row Show all	>Lus10024629 pacid=23161647 polypeptide=Lus10024629 locus=Lus10024629.g ID=Lus10024629.BGIv1.0 annot-version=v1.0 MAMSYFPSFIALDPDGDDDQLEPEPEEDLYNDSTITPHLPMETDDMPPKRRLQPLFGGHLDDADELDPTVDCSVCLDSIHYHNVDDDYPVGSTSVKRLAC CHVFHEDCIRRWLAVKASCPLCRLPVPSSVGGSSALRSFLFRWFCVD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	2.0	1.0000
					Lus10011962 [exp]	2.8	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	3.5	1.0000
					Lus10022805 [exp]	4.0	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	5.0	1.0000
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	5.5	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	5.9	1.0000
					Lus10030558 [exp]	6.3	1.0000
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030911 [exp]	6.7	1.0000
					Lus10033534 [exp]	7.1	1.0000

Compare expression of checked genes

Lus10024629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.