Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23330 122 / 3e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032266 [exp] 139 / 4e-43 AT4G23330 115 / 5e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103800 [exp] 130 / 2e-39 AT4G23330 174 / 1e-56 unknown protein Potri.003G127900 [exp] 51 / 1e-08 AT4G23330 57 / 4e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024630 pacid=23161612 polypeptide=Lus10024630 locus=Lus10024630.g ID=Lus10024630.BGIv1.0 annot-version=v1.0 ATGGAAGGCGCTGGAGGAGGAAAGAAGCATGGAGAGGCAATTGAGGAGCCGACGGAGCTTGGTCAATCGGTCGAAGGTTCGGAAGTGACCGATGAGAGTG GTGAGAAGGTGGTGAATCGGAGGGAGATAGTTAAGGTTGTGGAAGTTGTGGAGAAGGATTCACTGGCGATCGCCGAGAGCTTCACCGATCTCTTCTCATC TCTCAGATCCGCGCTCTCTGAGGCTACAACCAGCTCGGTCGATCATATGCAGTGCTTCGGCGATGCCACTGGCAGGCTTCAAGAGTCTGTGCTTGCTGCA GCTACAAAGGGTAATCGCTACATCAATTCATGTCTCAGGTTGAATGGAGAACTGAAGGGAATTGAAACACTTGCTGCTCAACTGTATCCTTTTCCTGCTT TAGTTTTGGCTTCTCAGCCATGGAAGTGA
AA sequence Show only first row Show all	>Lus10024630 pacid=23161612 polypeptide=Lus10024630 locus=Lus10024630.g ID=Lus10024630.BGIv1.0 annot-version=v1.0 MEGAGGGKKHGEAIEEPTELGQSVEGSEVTDESGEKVVNRREIVKVVEVVEKDSLAIAESFTDLFSSLRSALSEATTSSVDHMQCFGDATGRLQESVLAA ATKGNRYINSCLRLNGELKGIETLAAQLYPFPALVLASQPWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23330			unknown protein		Lus10024630 [exp]	0	1
AT4G28020			unknown protein		Lus10008905 [exp]	4.5	0.6912
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	8.1	0.7236
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	13.1	0.7325
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10003862 [exp]	14.3	0.7115
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Lus10013600 [exp]	14.8	0.7530
AT4G21720			unknown protein		Lus10017512 [exp]	21.7	0.6831
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	22.5	0.6300
					Lus10026124 [exp]	30.1	0.6715
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	30.6	0.6633
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	31.5	0.6507

Compare expression of checked genes

Lus10024630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.