Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63660 909 / 0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) AT1G25155 49 / 2e-06 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 49 / 2e-06 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 49 / 2e-06 Glutamine amidotransferase type 1 family protein (.1) AT1G25220 49 / 4e-06 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT3G27740 49 / 6e-06 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT1G24807 47 / 1e-05 Glutamine amidotransferase type 1 family protein (.1) AT5G57890 45 / 7e-05 Glutamine amidotransferase type 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032268 [exp] 1088 / 0 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Lus10018639 [exp] 42 / 0.0008 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128200 [exp] 972 / 0 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Potri.010G102200 [exp] 49 / 4e-06 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.008G138800 [exp] 47 / 1e-05 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00958 [flax] [poplar] GMP_synt_C GMP synthase C terminal domain CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Lus10024632 pacid=23161596 polypeptide=Lus10024632 locus=Lus10024632.g ID=Lus10024632.BGIv1.0 annot-version=v1.0 ATGGATCCAAAGGCAGTGAAATCCGACTTGGTCCTAATCCTCGACTACGGCTCCCAATACACCCACCTCATCACCCGCCGGATTCGCGCTCTCAGCATCT TCTCCCTCTGTATTTCGGGAACTTCCACTCTCGACGCCATAACTTCCCTCAACCCCAAGGTCGTCATCCTCTCCGGCGGCCCTCACTCCGTCCACACCGC CGATTCTCCCAGTTTCCCTGCTGGGTTCCTCGACTGGGCTCTGGAGAACGGCGTGTTTGTGCTAGGGATCTGCTACGGGCTGCAGCTGCTTGTGCAGAGG CTGGGTGGGGAAGTTAGGGTTGGGGATGCGCAGGAGTACGGCAGGATGGAGATTGAAGTTGTGGGGAATTTGGGGATTTTTGGGGATAAGAAGGTTGGGG ATAAGCAGGTGGCGTGGATGAGCCATGGAGATGAGGCGGCGAGGTTGCCGGACGGGTTTGAGGTTGTGGCGAAGAGCCAGCAAGGTGTTGTTGCTGCTGT TGAGAATCGGGAGAAGAGGCTTTACGGGTTGCAGTACCACCCTGAGGTGACTCATACACCGGAAGGGATGGACACATTAAGACATTTACTGTTTAATATC TGTGGAGTGGCAGCTGGTTGGAACATGGAAGATGTATCCGAGGAAGAGATCAAGGCGATTAAAGGAACCGTAGGACCTGAAGATCATGTGATATGTGCAT TGTCGGGTGGTGTAGATTCCACTGTTGCTGCTACGCTTGTTCATAAGGCGATTGGTGATAGGCTTCATTGCATTTTTGTTGACAACGGTCTGTTGAGGTA TAAGGAGAGAGAACGTGTGATGGAAACGTTTGAGAAGGATCTTCATCTGCCTGTTACTTGTGTTGATGCATCCGAACAGTTTCTTAGTCATCTGAAAGGT GTGACAGATCCCGAGGCAAAAAGGAAGATAATTGGGAGGGAATTCATCAACATCTTTGATGTTTTTGCCCATGATTTGGAGAAGAAGCTAGGAACTAAAC CTGCTTACCTTGTACAAGGAACTTTGTATCCTGATGTCATTGAATCCTGCCCGCCTCCTGGGTCAGGAAGAAGTCACTCTCACACGATCAAGAGTCATCA TAATGTTGGAGGACTTCCGAAGGACATGAAGTTGAAGCTAATTGAGCCTCTTAAGCTTCTATTCAAAGATGAGGTCCGACAATTAGGAAAGATCTTGGAT GTTCCTGTGGGATTCTTAAAGCGTCATCCTTTCCCTGGACCTGGCCTTGCTGTAAGAGTGTTGGGTGATGTAACTGAGGGCAATGCTTTAGATATCCTTC GCCTGGTGGATGAGATTTTCATCCAGTCCATCAAGGATGCGGGGCTATACGATACGATCTGGCAAGCTTTTGCAGTTTTCTTGCCTGTGAGAAGTGTTGG AGTTCAAGGAGATCAAAGAACTCACTCTCATGTTGTTGCCCTTAGAGCTGTTACAAGTCAAGATGGCATGACAGCAGATTGGTACTACTTTGAACACAAG TTCCTCGACGATGTCTCGCGCAAAATCTGCAACAGTGTACGAGGAGTGAACCGAGTTGTTCAAGATATTACATCAAAGCCTCCATCAACAATCGAGTGGG AGTGA
AA sequence Show only first row Show all	>Lus10024632 pacid=23161596 polypeptide=Lus10024632 locus=Lus10024632.g ID=Lus10024632.BGIv1.0 annot-version=v1.0 MDPKAVKSDLVLILDYGSQYTHLITRRIRALSIFSLCISGTSTLDAITSLNPKVVILSGGPHSVHTADSPSFPAGFLDWALENGVFVLGICYGLQLLVQR LGGEVRVGDAQEYGRMEIEVVGNLGIFGDKKVGDKQVAWMSHGDEAARLPDGFEVVAKSQQGVVAAVENREKRLYGLQYHPEVTHTPEGMDTLRHLLFNI CGVAAGWNMEDVSEEEIKAIKGTVGPEDHVICALSGGVDSTVAATLVHKAIGDRLHCIFVDNGLLRYKERERVMETFEKDLHLPVTCVDASEQFLSHLKG VTDPEAKRKIIGREFINIFDVFAHDLEKKLGTKPAYLVQGTLYPDVIESCPPPGSGRSHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGKILD VPVGFLKRHPFPGPGLAVRVLGDVTEGNALDILRLVDEIFIQSIKDAGLYDTIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHK FLDDVSRKICNSVRGVNRVVQDITSKPPSTIEWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	0	1
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	1.4	0.9575
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	2.4	0.9400
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	5.3	0.9047
AT4G20020			unknown protein		Lus10036589 [exp]	5.5	0.9001
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	6.2	0.9167
AT5G41970			Metal-dependent protein hydrol...		Lus10033229 [exp]	6.9	0.8944
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Lus10039230 [exp]	8.1	0.8357
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	10.7	0.8406
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	10.9	0.8389
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	11.8	0.8816

Compare expression of checked genes

Lus10024632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.