Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035486 [exp] 71 / 5e-13 ND / Lus10002011 [exp] 70 / 2e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128400 [exp] 47 / 3e-05 ND / Potri.001G103200 [exp] 44 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024633 pacid=23161650 polypeptide=Lus10024633 locus=Lus10024633.g ID=Lus10024633.BGIv1.0 annot-version=v1.0 ATGGATCCTAACTCAGGAAATGGAGATAAGCAGGACCAACAGAATTTCCAACACCGGTGGACGTTTCGTATGACCGATAACGACCTCGATTCGTTGAGCA ACGACTCGAGTTCCAGCCGTTCGAGCGAAGAAGAACCAACCTTGTCTCTCAAAATGCCTAGTAGTGTTCCTCCCCGCAATGTTGTTGTCATTGATGACGA CAAGGATGATGATAATGATCGTGGCAATAGCAAAGCTAAACTCGATGGTAGTAGCGAGATTCGGAATAAGGGAAAGCCTCGGAGGCCGAACACTACTAAG ATAGAAAGTAGTGTAGCAGCTCAGAACAAAAGAGTGAATAATAATAATAATGGTGATAATAATGCAGCTTTTGAGCAAGTTCCAGTACTGAATGACCTCA AGAACTACATGAGCTCCTTGCTCGACGAAATGAAGGAGACGAGGGGAGGAATGCTGACGTGTCTTAAGAAGGAGCTCAAGAAGATGGTGGCCGAGGAGGT CGCTTCGCAGTTCGAATTATTAAAGAGACAATGTAGCTGCAATCATCAGTTGCTTGCAACTCAAGAAACTGAGAAAACCACCACCAAGAACAAGAGGCCA TATGATGCTTGCGACGCAAGCAACCTCCGAAACGAAGACCATCATCATCGAAACAAGTACCACAGCATGGCGATTGTGCCGGTGGACAGTCGTCCTGAAG AGGTGCAAGTAGAGAAGCAGGAGCCAGAGATTGTGTTGGGGATTAAAGCTGACCATTCTGCCATAAGGTCTACTAAAAGGGGCAAAAGGGTAGCTGAATC TGAAGATAAATCCGGAGCAACAAGGTTAGGGTTAGGGTTAGGGTTAGGGTTCGGATTCGAGCCGGGGAGCTTGAGTTACAACCATACTACTCCCACAAAG TACTTAACTTTACCTACAAGGCAACTTGATGTTCAAGGCAGAGGAGTTCTTCAGGGTTCATCAGGAGGAAGCTACAACATGGGATACTTCCAGAGGCTGC TGCAGAGCGACGAGACGAGTAGCAGCAATGGAAGCAGAGCCTTAATGGGTTCCTACTTGAGAGAAAACAGGCTGACATCATCATCGTCGCCATCTCTGAT GGCTGGAAGATTAGGGTTTCAAGGCGGACTTCAGCAGAATGTTGGAGATGGTATTATGAACAGTAGGCAGTTTCCTGCTGGGTTGAGGATATCTGGAGGA GGTTTAAGGTTTACTGGTGGTGGGAGCAATTCTATGATGCAGATTCCCAACAGCAACAACTTCCAGTACCATGGAAATTACAGATCTGATCATGGAAGAA GCAATGTGGGGTTTCAAGATGGTTTCCAGTTCCATAAGTAG
AA sequence Show only first row Show all	>Lus10024633 pacid=23161650 polypeptide=Lus10024633 locus=Lus10024633.g ID=Lus10024633.BGIv1.0 annot-version=v1.0 MDPNSGNGDKQDQQNFQHRWTFRMTDNDLDSLSNDSSSSRSSEEEPTLSLKMPSSVPPRNVVVIDDDKDDDNDRGNSKAKLDGSSEIRNKGKPRRPNTTK IESSVAAQNKRVNNNNNGDNNAAFEQVPVLNDLKNYMSSLLDEMKETRGGMLTCLKKELKKMVAEEVASQFELLKRQCSCNHQLLATQETEKTTTKNKRP YDACDASNLRNEDHHHRNKYHSMAIVPVDSRPEEVQVEKQEPEIVLGIKADHSAIRSTKRGKRVAESEDKSGATRLGLGLGLGFGFEPGSLSYNHTTPTK YLTLPTRQLDVQGRGVLQGSSGGSYNMGYFQRLLQSDETSSSNGSRALMGSYLRENRLTSSSSPSLMAGRLGFQGGLQQNVGDGIMNSRQFPAGLRISGG GLRFTGGGSNSMMQIPNSNNFQYHGNYRSDHGRSNVGFQDGFQFHK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024633 [exp]	0	1
AT5G52790			CBS domain-containing protein ...		Lus10039288 [exp]	13.6	0.7548
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10024770 [exp]	15.3	0.7551
AT5G19640			Major facilitator superfamily ...		Lus10013736 [exp]	23.6	0.6634
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	67.5	0.6831
AT3G26590			MATE efflux family protein (.1...		Lus10006206 [exp]	115.8	0.6758
AT2G27550		ATC	centroradialis (.1)		Lus10019518 [exp]	146.1	0.6467
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10034019 [exp]	161.9	0.6532
					Lus10002730 [exp]	171.7	0.6248
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10001226 [exp]	190.8	0.6548
AT1G73210			Protein of unknown function (D...		Lus10018267 [exp]	198.0	0.6501

Compare expression of checked genes

Lus10024633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.