Plant FIBer expression Database

Lus10024634 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78190 169 / 2e-55 Trm112p-like protein (.1)
AT1G22270 136 / 1e-42 Trm112p-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032269
[exp]
202 / 2e-68 AT1G78190 186 / 3e-62 Trm112p-like protein (.1)
Lus10017505
[exp]
181 / 2e-60 AT1G78190 175 / 6e-58 Trm112p-like protein (.1)
Lus10028778
[exp]
164 / 5e-48 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G165000
[exp]
172 / 7e-57 AT1G22270 165 / 4e-54 Trm112p-like protein (.1)
Potri.002G096600
[exp]
147 / 4e-47 AT1G22270 169 / 2e-55 Trm112p-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF03966 Trm112p Trm112p-like protein
Representative CDS sequence
>Lus10024634 pacid=23161564 polypeptide=Lus10024634 locus=Lus10024634.g ID=Lus10024634.BGIv1.0 annot-version=v1.0
ATGAGGCTACTGACTCACAACATGCTCTCCTCCAACATCAAGGGAGTCGTCAACGGGTTCCCGCTCCGGATCGAGGCGGAGAAAGTGGTCGAGAAGGAAG
TCGATCTCAACCCCGACTTCCTCCGCAACATCTTCCACAAGATCGAGTGGAAGCCGCTCGCCGAAGCCGCGCGTGCCGTCGGGTACTCGGAGCTCCCGGA
GGCGGCGGAGGAGTCGATGCTGGAATCGGAGGAGTTCCTGGGGAAGTTCCACCACGCGCTGCTGGAGATCCACTTGGAGGAAGGGGCTCTGGTCTGCCCC
GAGACTGGGCGGAAGTTCTCCGTTAGCAAAGGGATCCCCAATATGCTCCTCCACGAGGATGAGGTTTAG
AA sequence
>Lus10024634 pacid=23161564 polypeptide=Lus10024634 locus=Lus10024634.g ID=Lus10024634.BGIv1.0 annot-version=v1.0
MRLLTHNMLSSNIKGVVNGFPLRIEAEKVVEKEVDLNPDFLRNIFHKIEWKPLAEAARAVGYSELPEAAEESMLESEEFLGKFHHALLEIHLEEGALVCP
ETGRKFSVSKGIPNMLLHEDEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78190 Trm112p-like protein (.1) Lus10024634
[exp]
0 1
AT2G29380 HAI3 highly ABA-induced PP2C gene 3... Lus10003887
[exp]
4.6 0.7688
AT1G28360 AP2_ERF AtERF12 ERF domain protein 12 (.1) Lus10013993
[exp]
7.6 0.7579
AT1G78190 Trm112p-like protein (.1) Lus10032269
[exp]
7.7 0.6920
AT4G13270 Late embryogenesis abundant (L... Lus10024264
[exp]
8.1 0.7406
AT3G24860 Trihelix Homeodomain-like superfamily p... Lus10022789
[exp]
12.1 0.7104
AT5G44170 S-adenosyl-L-methionine-depend... Lus10018640
[exp]
13.4 0.7235
AT1G28280 VQ motif-containing protein (.... Lus10025443
[exp]
15.5 0.6098
AT3G47620 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea ... Lus10013814
[exp]
15.6 0.7238
AT2G47990 SWA1, EDA13, ED... SLOW WALKER1, EMBRYO SAC DEVEL... Lus10017890
[exp]
18.0 0.7144
AT4G13270 Late embryogenesis abundant (L... Lus10023631
[exp]
22.2 0.7053

Lus10024634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.