Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41350 166 / 3e-52 RING/U-box superfamily protein (.1) AT4G00335 140 / 2e-42 RHB1A RING-H2 finger B1A (.1.2.3) AT5G38895 101 / 8e-27 RING/U-box superfamily protein (.1.2.3) AT3G02290 98 / 3e-25 RING/U-box superfamily protein (.1.2) AT5G15790 95 / 4e-24 RING/U-box superfamily protein (.1.2) AT4G23450 78 / 3e-18 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G22000 59 / 2e-10 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 57 / 6e-10 RHF1A RING-H2 group F1A (.1) AT5G37270 52 / 2e-08 RING/U-box superfamily protein (.1) AT5G37250 51 / 4e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032270 [exp] 331 / 7e-117 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1) Lus10017788 [exp] 138 / 2e-41 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10005084 [exp] 105 / 3e-28 AT5G38895 224 / 8e-75 RING/U-box superfamily protein (.1.2.3) Lus10034367 [exp] 91 / 1e-22 AT5G38895 215 / 2e-70 RING/U-box superfamily protein (.1.2.3) Lus10004636 [exp] 71 / 9e-16 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10029351 [exp] 65 / 2e-12 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 64 / 3e-12 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 62 / 1e-11 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 60 / 9e-11 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101700 [exp] 210 / 1e-69 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.003G129900 [exp] 192 / 2e-62 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 158 / 1e-48 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.002G161500 [exp] 127 / 8e-37 AT4G00335 159 / 8e-49 RING-H2 finger B1A (.1.2.3) Potri.017G100100 [exp] 107 / 2e-28 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.004G114800 [exp] 100 / 2e-26 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.010G140300 [exp] 91 / 1e-22 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.003G161600 [exp] 86 / 6e-21 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 86 / 1e-20 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.016G066400 [exp] 63 / 9e-12 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10024635 pacid=23161546 polypeptide=Lus10024635 locus=Lus10024635.g ID=Lus10024635.BGIv1.0 annot-version=v1.0 ATGCAGTATCCTAGAGTACCGGAAGAGCGTGTCCCATTGTCAGCTCACCATGGTACTGCGTCTACCTTCTCTACGGGGCTCCTGGTTGATACCAACCTGG ATACTTCGGTTCCCGATGCTTATAGGCCACCGCCAACGCCTATGCCATTCGATGTTGTTATAGGGCGTCCACAAACCCCGCCAGGGGCTCGAGAAACTCG CGGGGATAAGAATGATGGAACGTCGCAAGCTACAAATTCGAATTCTGATTCAATTCAAGAAACTGGTACTGCTGGTGGTGCGCAAGATGTAGCTGTTAGG TGTGAAGATGTCAAGGATCCGGATAAAATAAAAACAGATTTAGAACTTGATCCGGTAGAGGAGCTAGAGGTAGAAATTTCCAAGCCAGTTGGACCTTTTA TCCCTCCGACCGAGGAAGAGGATTGCTGTCCCACTTGTCTGGAAGAGTACGATGATGAGAATCCGAGAATCATCACCAAATGCGAGCATCATTTTCACCT GGCTTGCATTCTAGAATGGATGGAAAGAAGTGATACATGCCCTGTTTGTGATAAGGTCTGTTGA
AA sequence Show only first row Show all	>Lus10024635 pacid=23161546 polypeptide=Lus10024635 locus=Lus10024635.g ID=Lus10024635.BGIv1.0 annot-version=v1.0 MQYPRVPEERVPLSAHHGTASTFSTGLLVDTNLDTSVPDAYRPPPTPMPFDVVIGRPQTPPGARETRGDKNDGTSQATNSNSDSIQETGTAGGAQDVAVR CEDVKDPDKIKTDLELDPVEELEVEISKPVGPFIPPTEEEDCCPTCLEEYDDENPRIITKCEHHFHLACILEWMERSDTCPVCDKVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	0	1
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	2.0	0.8848
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	4.2	0.8842
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	6.6	0.8738
AT2G36780			UDP-Glycosyltransferase superf...		Lus10007597 [exp]	9.6	0.8362
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	10.4	0.8744
AT1G55915			zinc ion binding (.1)		Lus10037337 [exp]	12.6	0.8299
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	12.8	0.8502
AT1G22730			MA3 domain-containing protein ...		Lus10012205 [exp]	14.0	0.7667
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	14.1	0.8704
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	15.6	0.8343

Compare expression of checked genes

Lus10024635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.