Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11400 187 / 4e-53 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT2G46040 151 / 6e-40 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 116 / 8e-28 GYRB3 DNA GYRASE B3 (.1) AT1G13880 112 / 5e-27 ELM2 domain-containing protein (.1) AT2G03470 108 / 2e-25 MYB ELM2 domain-containing protein (.1.2) AT1G26580 104 / 7e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032272 [exp] 553 / 0 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032271 [exp] 289 / 8e-95 AT4G11400 77 / 1e-15 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 146 / 5e-38 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 144 / 5e-37 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10026655 [exp] 125 / 4e-31 AT1G26580 237 / 3e-72 unknown protein Lus10004658 [exp] 117 / 2e-28 AT1G26580 243 / 1e-74 unknown protein Lus10037097 [exp] 112 / 3e-26 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 110 / 1e-25 AT1G26580 253 / 1e-77 unknown protein Lus10000680 [exp] 104 / 4e-24 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101800 [exp] 249 / 1e-78 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 256 / 2e-78 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 183 / 4e-51 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.014G086700 [exp] 179 / 2e-49 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.017G091900 [exp] 126 / 1e-31 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 120 / 1e-29 AT1G26580 219 / 2e-65 unknown protein Potri.010G159700 [exp] 117 / 5e-28 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 110 / 9e-26 AT1G26580 280 / 3e-88 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024636 pacid=23161609 polypeptide=Lus10024636 locus=Lus10024636.g ID=Lus10024636.BGIv1.0 annot-version=v1.0 ATGGAAAGGTGTCTGCTGAAGAATTGTAGAGATGGAGAATTAGGGCATAGCGAGAGTGAGCAGGGCAGCGATTTCGTTACTTTCTCTCTTGATTTGGGGA CGAAGCTTAGGAGCTTGTTAGCTGATCGTAAATTGGATAAGGAAATGGGCAAGAATCTAGGTCTAGATGCTGGGGAAAGTAGATTAGGTATGTTTGGGGG CACTCCAAACACGTGCCGCCTGATTAAAGGCTTTCATGTTAGGAATGACGATGATGATGACGAAAATGTTGTCGTTGGCGGTTACGAGAAATATGGTGAC AATGCAGTTGATCCAGCAGTCAACACACTCACTGACCTTGATGGTGAGAAAAAGTCGCGTAAGAGAAAACGGGTATCCATGTCTAAGATGCTTAGCTGGA TGACTCAGGTTGCAGCATGTCCTTCCAATCATGAAGTCGTCTCCATGGATGGGAAAGGAAATGAGTTGAAGGCCTTGGCCATCGAAGCTCGTGATTTTCT GTCACGTAAAACTCGTTTCGATCTGAACCCTGTCCAGTGTCGCTCAAAGGATCAGCAAAAGATGGACTTGACCGGGCCTGAGGATAAGTTGAGATTCAGC AAGAGGCAGCTTGCATTACAACAATCTCAACCGCCTTCATGTTATGTTCGTACGTGGAATGCTAAAGACATGAAGGATCGAACTAATGCTGCTCTTGCTT CGCCCGTTACAAAAATGCTGATCGGACTGAAGGACGAGCATATCCAAGTTCGAGTCCACAGTCACTATCAGGTTACAGTCCCTAAATGGACCGGTGAGGT ATACGAGAGCGAGGACAAGTGGCTAGGAACTAAAATATGGCCTCTCCAAGATGCAGACACTACTAGTAGAGAGCTGGTTCCTTCGGACCATACCATCGGA AAGGGAAGGACCAGTTTCTGCAGCTGCAAGGTTCCAGGCTCGGTCTTATGTGTTCGTTTCCATATCGCCGAGAGGAGAATGAAACTCAAGCTGGAGTTAG GGCCAGCATTCTTCCATAGTGGATTCACAGTAATGGGCGAAGAAGTGTCGCTTAGATGGACTGCCGACGAAGAGAAGAGCTTTAAGAAGATGGTGAGGCG TAACCGTCCATCTCAAGATAAGAACTTTTGGGACTATGCTCATGTTTTCCTCCCGGGAAAGACTAGGAGGGAGCTTGTCAGCTATTACTTCAATGTGTTC CAACTTCAGCGGAGGACTTATCAGAACCGTGCAACTCCAAATGACATCGACAGCGAGGACGATGAGAAACAGTTTGGATCGTTCACCAATGGTTTCGGGG GCCATGCTATCGAGGTTCGCAATGTGGATGATGTGGACAAGACCATCTGTGTGCTGAACGAGCAGTGTACTAACTATACATTGGTATGA
AA sequence Show only first row Show all	>Lus10024636 pacid=23161609 polypeptide=Lus10024636 locus=Lus10024636.g ID=Lus10024636.BGIv1.0 annot-version=v1.0 MERCLLKNCRDGELGHSESEQGSDFVTFSLDLGTKLRSLLADRKLDKEMGKNLGLDAGESRLGMFGGTPNTCRLIKGFHVRNDDDDDENVVVGGYEKYGD NAVDPAVNTLTDLDGEKKSRKRKRVSMSKMLSWMTQVAACPSNHEVVSMDGKGNELKALAIEARDFLSRKTRFDLNPVQCRSKDQQKMDLTGPEDKLRFS KRQLALQQSQPPSCYVRTWNAKDMKDRTNAALASPVTKMLIGLKDEHIQVRVHSHYQVTVPKWTGEVYESEDKWLGTKIWPLQDADTTSRELVPSDHTIG KGRTSFCSCKVPGSVLCVRFHIAERRMKLKLELGPAFFHSGFTVMGEEVSLRWTADEEKSFKKMVRRNRPSQDKNFWDYAHVFLPGKTRRELVSYYFNVF QLQRRTYQNRATPNDIDSEDDEKQFGSFTNGFGGHAIEVRNVDDVDKTICVLNEQCTNYTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10024636 [exp]	0	1
AT4G30820			cyclin-dependent kinase-activa...		Lus10024924 [exp]	4.2	0.8153
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	6.5	0.8459
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	13.7	0.8329
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	15.7	0.8160
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	15.8	0.8250
AT2G25830			YebC-related (.1)		Lus10011628 [exp]	16.4	0.7783
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10003511 [exp]	16.7	0.8112
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032272 [exp]	22.8	0.7648
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	33.9	0.8164
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	37.1	0.8038

Compare expression of checked genes

Lus10024636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.