Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63800 214 / 4e-71 UBC5 ubiquitin-conjugating enzyme 5 (.1) AT5G41340 212 / 2e-70 ATUBC4, UBC4 ubiquitin conjugating enzyme 4 (.1) AT2G46030 203 / 4e-67 UBC6 ubiquitin-conjugating enzyme 6 (.1) AT3G08690 87 / 7e-22 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G64230 86 / 1e-21 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 86 / 3e-21 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G56150 85 / 5e-21 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT4G27960 84 / 8e-21 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 84 / 9e-21 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT3G08700 84 / 1e-20 UBC12 ubiquitin-conjugating enzyme 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032274 [exp] 264 / 3e-91 AT1G63800 278 / 5e-97 ubiquitin-conjugating enzyme 5 (.1) Lus10014763 [exp] 218 / 7e-73 AT1G63800 294 / 6e-103 ubiquitin-conjugating enzyme 5 (.1) Lus10042136 [exp] 208 / 4e-69 AT1G63800 267 / 2e-92 ubiquitin-conjugating enzyme 5 (.1) Lus10036372 [exp] 207 / 1e-68 AT1G63800 286 / 9e-100 ubiquitin-conjugating enzyme 5 (.1) Lus10002359 [exp] 207 / 4e-68 AT1G63800 275 / 5e-95 ubiquitin-conjugating enzyme 5 (.1) Lus10014187 [exp] 86 / 2e-21 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 86 / 2e-21 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 86 / 2e-21 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 86 / 2e-21 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101900 [exp] 246 / 7e-84 AT5G41340 292 / 3e-102 ubiquitin conjugating enzyme 4 (.1) Potri.003G129700 [exp] 237 / 2e-80 AT5G41340 284 / 5e-99 ubiquitin conjugating enzyme 4 (.1) Potri.002G161000 [exp] 234 / 2e-79 AT1G63800 288 / 1e-100 ubiquitin-conjugating enzyme 5 (.1) Potri.014G086600 [exp] 230 / 1e-77 AT1G63800 283 / 8e-99 ubiquitin-conjugating enzyme 5 (.1) Potri.015G073400 [exp] 209 / 3e-69 AT5G41340 268 / 1e-92 ubiquitin conjugating enzyme 4 (.1) Potri.019G083800 [exp] 90 / 6e-23 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.012G104100 [exp] 87 / 2e-21 AT5G50870 334 / 1e-118 ubiquitin-conjugating enzyme 27 (.1.2) Potri.001G094900 [exp] 86 / 2e-21 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 86 / 2e-21 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 86 / 2e-21 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10024638 pacid=23161595 polypeptide=Lus10024638 locus=Lus10024638.g ID=Lus10024638.BGIv1.0 annot-version=v1.0 ATGGAACAAGGCTTTGAGGAAGGCTCCGGTCTAGCTGATCGACCGGAAACAATGATCAGCGAGACTGGGGCTATCAAGAAGCTGACGAGGGAGTTTGATT CCCTTGGCGACATTAAGTCTCCAATTACGACCTTGGCCTCAAACCGCTATTGTCCTTACCAAGAAGGAATGTGGAAGATACGAGTGGAATTACCAGATGC TTATCCTTATAAGTCTCCATCCATTGGATTTATTAACAAGATCTACCACCCAAACGTGGATGAAATGTCCGGTTCGGTTTGCTTGGATGTTATCAATCAA ACTTGGAGCCCGATGTTCGATTTGGTGAATGTGTTTGAAGTGTTTCTTCCTCAGCTTCTTTTGTACCCCAATCCGTCGGATCCTTTGAATGGAGAAGCTG CTGCTTTGATGATGCGTGATCGTACTGCTTATGACCAAAGAGTGAAAGAGTATTGCGAAAAGTATGCGAGGCCGGAGGACGTTGGGGCGAAACCAGAAGA TGAATCGAGTGACGAGGAGCTGAGTGAAGCTGATGAATATGGCTCTGAGGATGATCAAATTGCAGGGAAAGCTGATCCCTGA
AA sequence Show only first row Show all	>Lus10024638 pacid=23161595 polypeptide=Lus10024638 locus=Lus10024638.g ID=Lus10024638.BGIv1.0 annot-version=v1.0 MEQGFEEGSGLADRPETMISETGAIKKLTREFDSLGDIKSPITTLASNRYCPYQEGMWKIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQ TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKEYCEKYARPEDVGAKPEDESSDEELSEADEYGSEDDQIAGKADP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10024638 [exp]	0	1
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10009353 [exp]	2.8	0.8655
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	5.3	0.8824
AT4G32960			unknown protein		Lus10007456 [exp]	9.8	0.8768
AT2G37480			unknown protein		Lus10023755 [exp]	10.8	0.8816
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	11.6	0.8871
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	12.0	0.8348
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	13.4	0.8672
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	16.1	0.8656
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	19.1	0.8186
AT1G55915			zinc ion binding (.1)		Lus10035762 [exp]	19.9	0.8101

Compare expression of checked genes

Lus10024638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.