Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23440 787 / 0 Disease resistance protein (TIR-NBS class) (.1) AT5G56220 419 / 1e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032275 [exp] 1100 / 0 AT4G23440 1274 / 0.0 Disease resistance protein (TIR-NBS class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129600 [exp] 877 / 0 AT4G23440 1332 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Potri.001G472200 [exp] 424 / 2e-137 AT5G56220 1305 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024639 pacid=23161503 polypeptide=Lus10024639 locus=Lus10024639.g ID=Lus10024639.BGIv1.0 annot-version=v1.0 ATGTGGAAGGAGTCTGAGAAAGAGATTGAGATGCAAAGCAATAACTTGTTATTCCGTCAGGTAAGGAGAAAACAAAACAGGAGAAGACGGTCTTCGAAGA TTTCGTACGGAAAGGGAGTTGCTTGTGTCTCGGGGGAACCGGGTATTGGCAAAACGGAGCTTCTTCTCGAATTTGCGTACCGGTATCACCAAAGATACAA AATGGTTCTGTGGATTGGAGGGGAAAGCAGGTATGTAAGGCAGAACTATCTCAACTTGTGGTCCTTTCTCGAAATCGATGTAGGATTGGAGAATTCAGAG AAAACAAAAATCCGAAGCTTTGGAGATCAAGAGGAAGAAGCCATTTCCAGAATCAGGAAAGAGCTCATGAGAAACATACCCTTTCTTGTGATCATTGACA ACTTGGAGAGTGAAAAGGATTGGTGGGATCAGAATCTTGTTATGGATCTGCTTCCGGTTTTCGGAGGAGAAACACATATACTTATATCCACACGCTTACC TCGAGTGATGAACTTAGAACCTATGAAGCTCTCCTACTTGTCAGGTGTCGAGGCAATGGTGTTGATGCAGGGAACCATGAAGGACTACTCGATTCCTGAA ATCGATGCGTTGAGAGCCATCGAGGAGAAAGTAGGACGGCTAACCTTAGGCCTCGCGATAGTCGGAGCAATTTTATCCGAGCTACCGATAAATCCAAGTA GGTTGCTTGACACTGTAAACAGAATGCCATTGAGGGAGATTCCATGGAGCAGTGGGAGAGAGACCAATCCACTTAGGAGAAACACTTTCCTGCTACAACT ATTCGAGGTATGCTTCTCGATTTTTGACCATGTGGATGGACCGAGAAGCTTGGCTAACCGGATGGTTCAAGCCAGCGGTTGGTTTGCTCCGGCTGCAGTA CCTGTATCCTTACTAGCCCTCGCAGCAAGCAAGATCCCGGAGAAAGATCGAGGCAAGAAAGCATGGAGACAGCTTCTCAGTTCGATGAGCTGTGGTCTGG CATCATCTTATACGAAAAGATCCGAGGCAGAGGCATCATCTCTTCTCTTAAGGTTCAACATAGCAAGAAGCAGTACAAGACCGGGATATATTCACATCAA TGAGCTCGTGAAGCTCTACTCTCGAAAGAAAGGAACTCCGGAAATCGCACGAGCCATGGTTCGAGCTGTGTTGAACCGTGGTTCAATATTCCACCACTCG GAACACATATGGTCAGCTTGCTTTTTAACATTCGGATTCGGAAACGATCCAAAGGCAGTCGAACTCCAAGTGCCGGAGCTACTATACATTGCCAAAGAAG TCGTCTTGCCACTAGCGATCAGGACGTTCATAACGTTGTCTCGATGTAAAGCTGCGGTGGAGCTGCTCCGACTTTGCACCGATGCGTTGGAAGAAGCGGA CCAGGCGTTTGTGACACCTGTTGAGAAATGGTTGGACAAGTCGTTGCTGTGTTGGAGGCCAATCCAGACGAATGCGCAGCTGAATCCTTACCTGTGGCAG GAGCTGGCGCTAACGAGGGCCACAGTGCTCGAGACTCGAGCCAAGTTGATGCTGAGAGGAGGGCAGTTTGATGTTGGGGATGATCTGATAAAGAAGGCTA TCTTTATAAGAGCATCCATCTGTGGAGAGAACCATCCGGATACTGTGGCTGCTAGAGAAACTCTGAGTAAGCTCAGCAGACTACTTGCTAAAGTTCAGAC TCACAGCAACAGTCCACCCTAG
AA sequence Show only first row Show all	>Lus10024639 pacid=23161503 polypeptide=Lus10024639 locus=Lus10024639.g ID=Lus10024639.BGIv1.0 annot-version=v1.0 MWKESEKEIEMQSNNLLFRQVRRKQNRRRRSSKISYGKGVACVSGEPGIGKTELLLEFAYRYHQRYKMVLWIGGESRYVRQNYLNLWSFLEIDVGLENSE KTKIRSFGDQEEEAISRIRKELMRNIPFLVIIDNLESEKDWWDQNLVMDLLPVFGGETHILISTRLPRVMNLEPMKLSYLSGVEAMVLMQGTMKDYSIPE IDALRAIEEKVGRLTLGLAIVGAILSELPINPSRLLDTVNRMPLREIPWSSGRETNPLRRNTFLLQLFEVCFSIFDHVDGPRSLANRMVQASGWFAPAAV PVSLLALAASKIPEKDRGKKAWRQLLSSMSCGLASSYTKRSEAEASSLLLRFNIARSSTRPGYIHINELVKLYSRKKGTPEIARAMVRAVLNRGSIFHHS EHIWSACFLTFGFGNDPKAVELQVPELLYIAKEVVLPLAIRTFITLSRCKAAVELLRLCTDALEEADQAFVTPVEKWLDKSLLCWRPIQTNAQLNPYLWQ ELALTRATVLETRAKLMLRGGQFDVGDDLIKKAIFIRASICGENHPDTVAARETLSKLSRLLAKVQTHSNSPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	1.0	0.9329
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	1.7	0.8919
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	2.0	0.8961
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	2.6	0.8577
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	3.2	0.8602
AT3G24150			unknown protein		Lus10019404 [exp]	5.5	0.8508
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	5.7	0.8428
AT5G52950			unknown protein		Lus10027565 [exp]	6.9	0.8559
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	6.9	0.8653
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	7.7	0.8228

Compare expression of checked genes

Lus10024639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.