Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23440 393 / 1e-128 Disease resistance protein (TIR-NBS class) (.1) AT5G56220 164 / 2e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032275 [exp] 686 / 0 AT4G23440 1274 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Lus10003749 [exp] 49 / 6e-06 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029921 [exp] 48 / 9e-06 AT5G36930 105 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 44 / 0.0002 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129600 [exp] 452 / 4e-151 AT4G23440 1332 / 0.0 Disease resistance protein (TIR-NBS class) (.1) Potri.001G472200 [exp] 172 / 3e-47 AT5G56220 1305 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G135700 [exp] 50 / 2e-06 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T126306 [exp] 46 / 5e-05 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G105201 [exp] 45 / 6e-05 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G037599 [exp] 45 / 8e-05 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T126506 [exp] 45 / 0.0001 AT3G14470 575 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T002300 [exp] 44 / 0.0002 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 43 / 0.0004 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 43 / 0.0004 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024640 pacid=23161676 polypeptide=Lus10024640 locus=Lus10024640.g ID=Lus10024640.BGIv1.0 annot-version=v1.0 ATGGACATTCGAGAAGATAGCTCGAAACCGGCCTTGTTACCACCAGTAGCGACTCTAAAGAGTGTGTCATCATCATCTTCAGCATTCTTTTCAGCAAATC AATCACCTTTCTTCTCACCAAGGTCACCAACTTGTCAAGTATCCGAATCCACAAGGTCTGACGCTAATTGCGACAGCATTATTAGCTCGACTTCAGGACT CCACGATCCCGAGTCTTTGGTCAATGTTAGGGACGATACATTGTCGCAAGTGTCGAGGGACCCTGGCATTGCTACTGATTATCAGAAGTTTGAGAGGATA ACATCCTCAACCGGAATATCCAACAGCAGTCCATCCGCCAGCAACAGCTTTTTCCACGAAAATGTATATCCAGTAGGGCCGAGAGAGAAGCATAGGAAGC ATGCTCGAGGTTACAGACCATCACCGGTTTCCTCCATCTCACTTTGCTCGAACAAGCTGAGGGGTTGTGATGTCTACATAGGTTTCCATGGCCGCAAGTC TTCTTTGCTGCGGTTCACTAATTGGCTGTGTGCTGAGTTGGAAGGTCAAGGAGTGAGAACCTTCGTATCTGACCGAGCCCGATGCAAAAATTCCGGGAAG AGAGGGCTAGCTGAAAAGGCAATGGATGTTTCGTCTTTCGGAATAATAGTCTTGACAAGGAAATGCTTCAGGAACTCTTACACCATTGAGGAGCTGAGGT TCTTTTCAGACAAGAAGAACTTAGTTCCTGTGTTTTTCGATTTGAGCCCGGGGGATTGCCTTGTTAGGGACATTGTTGAGAAGAGTGGGGAATTATGGGA CAAACATGGAGGTGAGCTGTGGAATCATTATGGTGGTTTGGAGCAAGAGTGGAAAGAAGCTATCAATAGCCTATCCCGAGTCGACGAATGGAAGCTAGAG GCTCAGGAAGGTAACTGGAGAGACTGCATACAGAGAGCTGTCACACTTCTGGCAATGCAGTTAGGAAGGAGAAGTGTTGTGGATAGAGTAACACAGTGGA GGGAGAAAGCAGACAAAGAAGAGTTCCCCTTGCCACGAAACGAAATTTTCGTTGGTAGGAAGAAGGAACTCTCCGAGTTGGAATTCATGCTTTTCGGTGA TGTCTGTGGAGATACAGAACGAGATTATTTCGAAGTTTATTTCGGGCAAAAGGAAAGACATGAAAGGAAAAAGGGATGA
AA sequence Show only first row Show all	>Lus10024640 pacid=23161676 polypeptide=Lus10024640 locus=Lus10024640.g ID=Lus10024640.BGIv1.0 annot-version=v1.0 MDIREDSSKPALLPPVATLKSVSSSSSAFFSANQSPFFSPRSPTCQVSESTRSDANCDSIISSTSGLHDPESLVNVRDDTLSQVSRDPGIATDYQKFERI TSSTGISNSSPSASNSFFHENVYPVGPREKHRKHARGYRPSPVSSISLCSNKLRGCDVYIGFHGRKSSLLRFTNWLCAELEGQGVRTFVSDRARCKNSGK RGLAEKAMDVSSFGIIVLTRKCFRNSYTIEELRFFSDKKNLVPVFFDLSPGDCLVRDIVEKSGELWDKHGGELWNHYGGLEQEWKEAINSLSRVDEWKLE AQEGNWRDCIQRAVTLLAMQLGRRSVVDRVTQWREKADKEEFPLPRNEIFVGRKKELSELEFMLFGDVCGDTERDYFEVYFGQKERHERKKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	2.6	0.8577
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	3.2	0.8163
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	5.7	0.8556
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	7.2	0.8200
AT5G14880			Potassium transporter family p...		Lus10012888 [exp]	8.5	0.7611
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	9.6	0.8424
AT2G46990	AUX_IAA	IAA20	indole-3-acetic acid inducible...		Lus10010081 [exp]	17.8	0.7408
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10000256 [exp]	18.3	0.7810
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	19.1	0.7848
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	19.4	0.7059

Compare expression of checked genes

Lus10024640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.