Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63770 1510 / 0 Peptidase M1 family protein (.1.2.3.4.5) AT4G33090 91 / 2e-18 ATAPM1, APM1 aminopeptidase M1 (.1) AT5G13520 54 / 3e-07 peptidase M1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026448 [exp] 93 / 7e-19 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1) Lus10025002 [exp] 92 / 1e-18 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1) Lus10025001 [exp] 92 / 1e-18 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1) Lus10040361 [exp] 49 / 1e-05 AT5G13520 729 / 0.0 peptidase M1 family protein (.1) Lus10023479 [exp] 45 / 0.0003 AT5G13520 551 / 0.0 peptidase M1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129500 [exp] 1558 / 0 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G101975 [exp] 1278 / 0 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G102051 [exp] 642 / 0 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G102126 [exp] 501 / 3e-171 AT1G63770 482 / 2e-165 Peptidase M1 family protein (.1.2.3.4.5) Potri.006G224500 [exp] 94 / 3e-19 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1) Potri.017G039200 [exp] 85 / 2e-16 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1) Potri.008G045900 [exp] 57 / 6e-08 AT5G13520 965 / 0.0 peptidase M1 family protein (.1) Potri.010G215700 [exp] 53 / 9e-07 AT5G13520 926 / 0.0 peptidase M1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF11940 [flax] [poplar] DUF3458 Domain of unknown function (DUF3458) Ig-like fold CL0126 [flax] [poplar] Peptidase_MA PF01433 [flax] [poplar] Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence Show only first row Show all	>Lus10024641 pacid=23161512 polypeptide=Lus10024641 locus=Lus10024641.g ID=Lus10024641.BGIv1.0 annot-version=v1.0 ATGGCTCGGTTGTTGATTCCTCCTTGCAAAAGTTCGTGTTTTCCAAAGAGCAGTCTCTTGAATTTGTTCTCCGCTTCAGCTCCTCTCCGGGCGACAGCGC GAGCTAGTAGTTTTCGGAGTTCTTTGAGAGGTTATTCTAGTTACAGACAACTCCTTAGTTCGGTGGTAGCATTTCAAAGAAATCATCAGTTCTCACATTT GGGATTACATAGTTCTAGTCAAGATACTCGAAGGCTAATTTGTTTGGTTGCCACAGAACCGTTGCCCAAAGAAACAGAAGAAGCGAAAATGGACGCACCA AAGGAAATCTTTCTGAAGGATTACAAGTTGCCAGATTACTATTTTGACACGGTTGATTTGAGCTTCTCCCTTGGAGAGGAGAAGACATTTGTTAACTCTA AAATAGCTGTATCCCCCAGAGTTGAAGGTTCCTCTTCCCCATTGGTTTTGAATGGACATGATCTGAAGCTAATTTCCCTCAAAATCAACGGGAATGTGCT AAAGGAAGTGGATTATCAAATAGATTCCCGGTATTTGACCATCCTGTCACCTCCAAGTGGGGCATTCACTTTGGAAATTATCACTGAGATATATCCTCAG AAGAACACGTCATTAGATGGACTATACAAGTCATCTGGAAACTTCTGCACTCAATGTGAAGCAGAGGGTTTCCGAAATATCACATTTTTCCAGGATCGCC CTGATATAATGGCTAAGTACACATGTCGAATTGAGGCTGATAAGTTATTATACCCGGTGTTGTTGTCCAATGGAAATCTCTTAGAACAAGGAGAACTTGA GGGAGGCAAGCATTTTGCTCTTTGGGAAGACCCCTTCAAGAAACCTTGTTACTTGTTCGCTCTAGTTGCTGGTCAGCTCGAGAGTAGAGATGACACATTT GTGACACGTTCTGGTCGGACCGTGCAGCTTAGGATCTGGACACCTGCACAGGACCTGTCTAAGACTGCACATGCCATGTATTCACTTAAGGCTGCGATGA AATGGGATGAAGAGGTATTTGGTCTTGAGTACGATCTAGACCTCTTCAATATTGTTGCTGTTCCTGACTTCAACATGGGTGCTATGGAGAATAAGAGTTT AAATATATTTAATTCCAAGCTCGTTTTGGCATCACCTGAGACTGCCACAGATGCAGATTATGCTGCTATTTTGGGGGTCATTGGTCATGAGTATTTCCAT AACTGGACAGGAAACAGGGTGACCTGTCGAGACTGGTTCCAACTCAGTTTAAAGGAAGGTCTAACTGTATTCAGAGATCAGGAATTTTCGTCAGACATGG GAAGTCGCACAGTGAAGAGGATTGGCGATGTCTCTAGACTTCGCAACTATCAGTTTCCTCAGGATGCTGGTCCAATGGCACATCCTGTTAGGCCTCATTC TTACATCAAGATGGACAATTTCTATACAGGTTGGTTTAACTGCTGGATAACAGGAGGTGCTGAAGTCGTGAGGATGTACAAAACCTTGTTGGGAAGCCAG GGTTTCAGAAAGGGCATGGATCTTTACTTCAAAAGGCATGATAGTCAAGCTGTAACCTGTGAAGATTTCTTTGCTGCAATGAGAGATGCAAATGGTGCTG ATTTTGCAAACTTCTTGTTATGGTATTCCCAAGCCGGCACACCAACTGTTAAAGTTGCATCAAACTATAATGCGGAAGCTAAGACTCTCTCTTTGAAGTT CAGTCAAGAGGTACCACCTACCCCTGGACAGCCGATCAAAGAACCCATGTTCATCCCGGTGGCATTAGGCTTGTTGGACTCGAGTGGCAAGGACTTGCCT CTTACTTCTGTATATCATGATGAAACATTGCAATCAATTGCTAGCGATGGGCAGCCAGCCTACAGTACTGTACTTAGGGTAACCAAGAAAGAAGAGGAAT TTATTTTCAACGACATTGCGGAGAAGCCAGTGCCTTCATTATTGCGGGGTTATAGCGCTCCCATCCGTCTTGTATCTGATCTTTCTGATGACGATCTGTT CTTCCTCCTTGCTCATGATTCAGATGAGTTCAACCGGTGGGAAGCTGGTCAGCTATTGGCTAGGAAGCTAATGCTCAGCCTAGTTGCTGATTTCCAACAA AACAAGTCATTGGCTTTGAATCCAAAATTTGTGCAAGGCCTGAGAAGCATACTTTCAGACTCGTCCTTGGATAAAGAATTTATTGCAAGAGCAATTACTC TTCCTGGTGAAGGCGAAATAATGGACATAATGGAAGTTGCAGATCCTGATGCTGTACATGCGGTGCGCTCATTCATAAGGAAGCAACTTGCAACAGAACT TAGAGCAGATCTATTGAACACTGTCAAGAATAACCGAAGTTCGGAAGTATATGTGTTTGACCATCCAAATATGGCTAGACGGGCATTAAAGAACATTGCA CTAGCATATCTAGTTTCACTTCAAGATGAAGAGTTAACCGAGCTTGCACTGAATGAATACAAGTCTGCCACAAATATGACAGACCAGTTCTCAGCTTTGG CAGCCTTAGCTCAGAATCCAGGTACAACCCGCGACGAAGTACTGGCTGACTTCTACGACAAGTGGCAAGATAACTATCTGGTTGTGAACAAATGGTTTGC CCTTCAAGCCATGTCTGACATTCCCGGAAACGTGGAGAATGTTCGGAAGCTGATGAGTCACCCGGCATTCGATTTACGCAATCCAAACAAGGTATATTCC CTGATCGGAGGGTTTGGCGGCTCTCCAGTTAACTTCCATGCCAAAGATGGTTCAGGCTACAAGTTCCTGGGCGAGATAGTGGTGCAGCTTGACAAAATCA ATCCTCAGGTGGCTTCACGTATGGTGTCGGCCTTCTCTAGATGGAAGAGATACGACGAAACAAGACAGAACCTTGCCAAGGCTCAGCTGGAGATGATAGT GTCTGCAAATGGGCTGTCGGAGAATGTGTTTGAGATCGCCTCTAAAAGTTTGGCTGTCTGA
AA sequence Show only first row Show all	>Lus10024641 pacid=23161512 polypeptide=Lus10024641 locus=Lus10024641.g ID=Lus10024641.BGIv1.0 annot-version=v1.0 MARLLIPPCKSSCFPKSSLLNLFSASAPLRATARASSFRSSLRGYSSYRQLLSSVVAFQRNHQFSHLGLHSSSQDTRRLICLVATEPLPKETEEAKMDAP KEIFLKDYKLPDYYFDTVDLSFSLGEEKTFVNSKIAVSPRVEGSSSPLVLNGHDLKLISLKINGNVLKEVDYQIDSRYLTILSPPSGAFTLEIITEIYPQ KNTSLDGLYKSSGNFCTQCEAEGFRNITFFQDRPDIMAKYTCRIEADKLLYPVLLSNGNLLEQGELEGGKHFALWEDPFKKPCYLFALVAGQLESRDDTF VTRSGRTVQLRIWTPAQDLSKTAHAMYSLKAAMKWDEEVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFH NWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIGDVSRLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGWFNCWITGGAEVVRMYKTLLGSQ GFRKGMDLYFKRHDSQAVTCEDFFAAMRDANGADFANFLLWYSQAGTPTVKVASNYNAEAKTLSLKFSQEVPPTPGQPIKEPMFIPVALGLLDSSGKDLP LTSVYHDETLQSIASDGQPAYSTVLRVTKKEEEFIFNDIAEKPVPSLLRGYSAPIRLVSDLSDDDLFFLLAHDSDEFNRWEAGQLLARKLMLSLVADFQQ NKSLALNPKFVQGLRSILSDSSLDKEFIARAITLPGEGEIMDIMEVADPDAVHAVRSFIRKQLATELRADLLNTVKNNRSSEVYVFDHPNMARRALKNIA LAYLVSLQDEELTELALNEYKSATNMTDQFSALAALAQNPGTTRDEVLADFYDKWQDNYLVVNKWFALQAMSDIPGNVENVRKLMSHPAFDLRNPNKVYS LIGGFGGSPVNFHAKDGSGYKFLGEIVVQLDKINPQVASRMVSAFSRWKRYDETRQNLAKAQLEMIVSANGLSENVFEIASKSLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63770			Peptidase M1 family protein (....		Lus10024641 [exp]	0	1
AT3G44330			unknown protein		Lus10013307 [exp]	7.9	0.8461
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	14.1	0.8096
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	16.7	0.7894
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	19.1	0.8189
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10030293 [exp]	26.6	0.8173
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Lus10007062 [exp]	31.7	0.7771
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	34.4	0.8145
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10001145 [exp]	35.9	0.7689
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	38.3	0.7974
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	48.7	0.7530

Compare expression of checked genes

Lus10024641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.