Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52430 193 / 2e-56 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 159 / 2e-44 unknown protein AT4G25620 147 / 3e-39 hydroxyproline-rich glycoprotein family protein (.1) AT1G76660 118 / 7e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032276 [exp] 753 / 0 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 294 / 3e-92 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 291 / 2e-91 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 198 / 2e-56 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10039253 [exp] 195 / 7e-56 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10016050 [exp] 121 / 6e-30 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 122 / 2e-29 AT1G76660 420 / 1e-141 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102200 [exp] 341 / 2e-113 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 298 / 2e-96 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1) Potri.012G144200 [exp] 253 / 3e-78 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G001100 [exp] 130 / 6e-33 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 120 / 9e-30 AT1G76660 453 / 7e-158 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024642 pacid=23161626 polypeptide=Lus10024642 locus=Lus10024642.g ID=Lus10024642.BGIv1.0 annot-version=v1.0 ATGCGACGAGGAAATAGTAGTCATAGCGGCGGAGGAATAGGAGCTGTAGGTTCCAGCAGAGCTCCAGCTCCTCCGTTAAACAATAGTAACAGCGCCTTGG ATACTATTAACGCCGCTGCTTATCGCATAGCCTCGCTTGAGGATCGTCCTACTCAGGCCACTTCCGCCGCCGCTTCTGCTCAGAAGAGGGGATGGGGAGG GTGCTGGAACATATACTTTTGCTTTGGATATCAGAGGCGCAGGAAACAAATTGGACATGCTGTAATTCTCCCAGAACCACAACCTTCCGGAGCTGGAAAT GAAGCATCTACCACAGCAGAAAATCAAAACCAAGCTACAACATTTGTATTCCCCTTTAATGCACCTCCTTCCTCACCTGCTTCATTCCTTCCATCAGAAT CTCCCTCAGTCACACAATCACCAGCTGCTTCAATCTCTCTGTCTGCCTCCATGTACTCTCCAACTGGACCATCCTCCATCTTTGCCATCGGTCCTTATGC CCACGAAACCCAGTTGGTTTCACCGCCCGTGTTCTCAACCTTCACCACCGAGGCATCAACAGCTCCTTTCACACCTCCCCCAGAGTCTGTTCACCTCACT AACACCACACCTTCCTCGCCTGAAGTCCCTTTTGCTCAGCTTCTAGACCCCAGGTTCCGAAACGGTCAACATGATCTGACATTCCCGTCATCTCACTATG AGTTCCAGTACTATCAGTTTCATCCTGGAAGCCCCGCAGGCCAGCTCATTTCACCTCGCTCGGGCATATCGAGTTCAGGGACTTCATCCCCTTTCCAAGA TGGCCAGTTTGCCGCTGTTGGGTTCCCCTTTATGGAGTTTCATATAGGTGAACCTCCAAACCTCCTGAGCCCTGGTAAGCTTTCACCACAGGATTTGGGT TCACGTCAAGGATCTGGAACTTTGACCCCAAACTCTGTAAGGTCTACATCGGAAAGCCACTTTGTCTTAAACCGTCAATTCTCCGATCTTGGCCATGTGG GTGGTGGTGAACGTCAAAACTATCAGCTCTCCCATCACAGAGTCTCTTTTGACTGGCCAGCTGGTGATCCTTCGAGATATGAAGAGCCAAATGGAACAAA ATCACCCGAAACATCCAACAATGCACCGGAAAAAGCTCCTGATGCTAGGAAGGAGGATGGGGAGGAAGATGGACCAACCCATGGTAGACGACATCGAACC ATAACGCTTGGCTCTGCCAAAGACTTCGAATTTGTAGACGAAGAAGAAGATACCGAAGGAAAAGACACACAGAAAAAGCCTAATAACTGGTGGAGGAATA ATGGTGGGAGTGTCATTGGAAAACAAGGGGAAACTCTAGAGAATTGGTCATTCTTTCCTACTATCCAGCCCGGTAGAGTTAACTAG
AA sequence Show only first row Show all	>Lus10024642 pacid=23161626 polypeptide=Lus10024642 locus=Lus10024642.g ID=Lus10024642.BGIv1.0 annot-version=v1.0 MRRGNSSHSGGGIGAVGSSRAPAPPLNNSNSALDTINAAAYRIASLEDRPTQATSAAASAQKRGWGGCWNIYFCFGYQRRRKQIGHAVILPEPQPSGAGN EASTTAENQNQATTFVFPFNAPPSSPASFLPSESPSVTQSPAASISLSASMYSPTGPSSIFAIGPYAHETQLVSPPVFSTFTTEASTAPFTPPPESVHLT NTTPSSPEVPFAQLLDPRFRNGQHDLTFPSSHYEFQYYQFHPGSPAGQLISPRSGISSSGTSSPFQDGQFAAVGFPFMEFHIGEPPNLLSPGKLSPQDLG SRQGSGTLTPNSVRSTSESHFVLNRQFSDLGHVGGGERQNYQLSHHRVSFDWPAGDPSRYEEPNGTKSPETSNNAPEKAPDARKEDGEEDGPTHGRRHRT ITLGSAKDFEFVDEEEDTEGKDTQKKPNNWWRNNGGSVIGKQGETLENWSFFPTIQPGRVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	0	1
AT3G50910			unknown protein		Lus10028325 [exp]	2.0	0.9703
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	2.4	0.9700
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	4.7	0.9717
AT4G39230			NmrA-like negative transcripti...		Lus10042311 [exp]	6.2	0.9561
AT5G04500			glycosyltransferase family pro...		Lus10038646 [exp]	6.3	0.9554
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	8.2	0.9580
AT5G57510			unknown protein		Lus10028472 [exp]	13.7	0.9632
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	15.5	0.9667
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	17.3	0.9581
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	17.7	0.9653

Compare expression of checked genes

Lus10024642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.