Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41330 551 / 0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT3G09030 195 / 1e-56 BTB/POZ domain-containing protein (.1) AT4G30940 86 / 6e-18 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT2G24240 74 / 5e-14 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT5G55000 45 / 6e-05 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032277 [exp] 924 / 0 AT5G41330 574 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10028780 [exp] 714 / 0 AT5G41330 544 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10017502 [exp] 712 / 0 AT5G41330 546 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10004834 [exp] 104 / 6e-25 AT3G09030 283 / 4e-93 BTB/POZ domain-containing protein (.1) Lus10036274 [exp] 74 / 5e-14 AT2G24240 740 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10021855 [exp] 71 / 1e-12 AT2G24240 742 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10002501 [exp] 67 / 1e-11 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10038089 [exp] 48 / 5e-06 AT3G09030 144 / 7e-41 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129300 [exp] 674 / 0 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.001G102300 [exp] 653 / 0 AT5G41330 568 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.016G112900 [exp] 181 / 2e-51 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.006G185300 [exp] 75 / 3e-14 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.018G107600 [exp] 73 / 1e-13 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.011G119500 [exp] 45 / 8e-05 AT3G15354 982 / 0.0 SPA1-related 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF02214 [flax] [poplar] BTB_2 BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10024643 pacid=23161588 polypeptide=Lus10024643 locus=Lus10024643.g ID=Lus10024643.BGIv1.0 annot-version=v1.0 ATGGCGCCGTCTACAGCCACGATGCTTTCCATGCCAGACACCAACCGCCACAGTTTCCACCACAAGGTAATGAACCCAACCTCCGACATCTTGACCATCG ACGTCGGCGGCCAAATCTTCCAAACAACCAAACAAACCCTATCCCTCGCCGGCCCCAATTCGCTCTTCTCCCAACTCTCCAATCCCAACATAATCGGCAC TCGCTTCATCGACCGAGACCCGGAGCTTTTCTCCGTCTTGCTCTCCCTCCTCCGAACCGGGAATCTCCCGTCCAAAGCCAAGGCCTTCGACATCGAGGAT CTAATCGAAGAGTCCAGATTCTACAACATCGAGTCGTTACTGATCGATTCCTTATCTCACCCGTCTCATTTCGAAGCGTTCAACCTCGAGAAGTCGATGA TCCTGCCACTCAACGGCAGGGATTCTCCATCGTCCATCGCCACCACGCCGTCCGGAACCCTACACGTCGCTCATGGAAGCAAGATCACGAGCTTTGACTG GTCGTTGAGGAAGAAAGCGACGATCTTGACCCAATTCACAGCGATTGATTCCTTGCTAGCTATTTCGCCTTCATTGGCAGCAGCCGGAGCCACCGATTTC TCCGGATTGCAGATCCTCGACATGGAGAGGGGGTTCGTCAAAGAAACCCTAAATTGGGAGAACGTGACGAAATCCGGGTCGACGGTTCAGGCAATCGGGT CGTCTCCGGGTCTGCTCTTAACCAGCTTCGAATCCAGCCGGAGGAACTCGAATTGCATCATGGTGTACGATATGGAGACGTTTCAGCCGGTTACGGAGAT CGGTCACTACGAGATTTATGGAGCCAATCTCGATTCTGCTATTCCGGCGACAAAATTGAAATGGATCGAGAGTTACAACATGGTGATGGCGTCCGGGTCG CATTCGGGTCCTTCGGGGAGATTGGGGAACGTTAAGCTGTGGGATGTGAGGTCAGGGAATGTGGTATGGGAACTGAAGGAGAAAGTCGATTGCTTTGCTG ACATTACAGTGTCTGATAGCTTGTCTGCCATGTTCAAAGTTGGGGAGAGCTCAGGAGAAGTGTTCTACATGGATTTGAGGAAGCTGAGTAGTAATGGTGA CGTGGAAGGTTCAGAGTGGGTTTGCCTTGGTGATGAGAGGAAAGTAGGGGATGTGATGAAGAAGAAGGAAGGAGTTGGTTCCAAGATTGAAGCTCACGGG AACCAAGTTTTCTGCAGCAAAGATGGGAACATTGAGCTTTGGTCTGAGGTTATGATGGGCGGTCGGAGAACGATCAATGCTGATGGCAACCGGTTGCCTA GTCGGGTGTTCCGGAAGAATTTGATGGGAAGATCCAAGGACATGGGAGGTGCAAAGATTACTAATCTTGGGTTTGGAGGGAACAAGATGTTTGTGACTCG TAAAGATCAGCAGTGTGTTGATGTGTGGCAGAGCTCCTCTGCTAAGGGATTTTGA
AA sequence Show only first row Show all	>Lus10024643 pacid=23161588 polypeptide=Lus10024643 locus=Lus10024643.g ID=Lus10024643.BGIv1.0 annot-version=v1.0 MAPSTATMLSMPDTNRHSFHHKVMNPTSDILTIDVGGQIFQTTKQTLSLAGPNSLFSQLSNPNIIGTRFIDRDPELFSVLLSLLRTGNLPSKAKAFDIED LIEESRFYNIESLLIDSLSHPSHFEAFNLEKSMILPLNGRDSPSSIATTPSGTLHVAHGSKITSFDWSLRKKATILTQFTAIDSLLAISPSLAAAGATDF SGLQILDMERGFVKETLNWENVTKSGSTVQAIGSSPGLLLTSFESSRRNSNCIMVYDMETFQPVTEIGHYEIYGANLDSAIPATKLKWIESYNMVMASGS HSGPSGRLGNVKLWDVRSGNVVWELKEKVDCFADITVSDSLSAMFKVGESSGEVFYMDLRKLSSNGDVEGSEWVCLGDERKVGDVMKKKEGVGSKIEAHG NQVFCSKDGNIELWSEVMMGGRRTINADGNRLPSRVFRKNLMGRSKDMGGAKITNLGFGGNKMFVTRKDQQCVDVWQSSSAKGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	0	1
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	1.4	0.9619
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	1.4	0.9635
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10012215 [exp]	2.4	0.9583
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	3.5	0.9473
					Lus10039442 [exp]	4.0	0.9143
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	4.2	0.9374
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	4.5	0.9434
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	5.2	0.9099
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	5.3	0.9338
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	7.2	0.8917

Compare expression of checked genes

Lus10024643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.