Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63710 562 / 0 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT4G00360 540 / 0 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 534 / 0 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT2G45970 528 / 0 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT5G58860 444 / 7e-154 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT5G23190 365 / 2e-122 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 354 / 9e-119 Cytochrome P450 superfamily protein (.1) AT1G13150 302 / 7e-98 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT1G24540 298 / 2e-96 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT3G26125 296 / 2e-95 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032278 [exp] 784 / 0 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10014768 [exp] 541 / 0 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10040687 [exp] 464 / 2e-161 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 463 / 3e-161 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018831 [exp] 364 / 2e-125 AT4G00360 403 / 8e-139 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10010193 [exp] 338 / 1e-111 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 335 / 2e-110 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 317 / 4e-103 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10006232 [exp] 285 / 6e-91 AT1G24540 524 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129100 [exp] 623 / 0 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.014G085800 [exp] 567 / 0 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.009G043700 [exp] 463 / 3e-161 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 454 / 8e-158 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 343 / 8e-114 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 338 / 3e-111 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 307 / 6e-100 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 305 / 4e-99 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.015G132800 [exp] 273 / 7e-87 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 271 / 5e-86 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024644 pacid=23161662 polypeptide=Lus10024644 locus=Lus10024644.g ID=Lus10024644.BGIv1.0 annot-version=v1.0 ATGGGCAGGTGGGTGAACCGGGCGATTAAGAACCGGTTCTGCCCGATTCTCGAGTCGGCTCAGCTCCGAGGCGAGCCGATTGACCTCCAGGATTTGCTGC TTCGGCTCACTTTCGACAACATTTGCGGGTTGGCTTTTGGAGAAGATCCGGAGACGTTGTCTCCCGAGCTCCCCGAAAACGGCTTTGCAGTGTCGTTTGA TTGTGCCACGGAAGCCACGCTGCAGCGCTTCATCGTGCCCGAGCTTGTGTGGAAGTTGAGGAAACGACTCGGGCTCGGGATGGAAGTTAGTATGACTCAA AGCCTTGACCATATCGACGGGTACTTGTCCAAAATCATCAATACACGTAAGCTCGAGCTGGCAGGCTTAGCGAAGAGTACTAGCAGCAACGGGGACCCAC ACGATGACTTGTTATCCCGATTCATGAAGAAAAAAGAATCATACTCTGAGAAATTCCTTCAACACGTGGCGTTGAATTTCATCCTAGCTGGACGGGACAC GTCGTCCACGGCGCTGAGTTGGTTTTTCTTCCTAGTGAGTCAAAACCCACGAGTGGAAGAGAAAATCCTGATGGAGATCTGCACCGTTCTGACAAAGACA CGTGGCGAATTCCTTAACCCATCGTCATCCGATTGGCTAAAGGAGCCACTCGGGTTCGAAGAGGTTGACCAATTGATATATCTCAAGGCTGCATTATCTG AGACACTAAGGTTGTACCCGTCGGTCCCACAAGACTCCAAACACGTGGTGGCCGACGACATCCTGCCTTCGGGAGCCCGCGTTCCGGCAGGATCGTCGGT GACCTACTCGATCTACTCGATGGGTCGAATGAAATTCATATGGGGAGACGACTGCCATGAATTCAGGCCGGAGAGGTGGCTGACACAGGATGGTACGAAA TTTGACGTGCGAGACTCGTACAAGTTCGTGGCTTTCAATGCGGGGCCGAGGATCTGCCTAGGGAAGGACCTGGCATACTTGCAAATGAAGTCAATCACGG CGGCGGTGTTGCTCCGACACCGGCTGACGGTGGTGCCGGGGCACCGTGTGGAGCAGAAGATGTCGCTGACATTGTTCATGAAGTATGGTTTGGTGATGGA TGTTAGGCCGAGGGACCTTGGGCCGATTGTGGGGAAACTAAGCAGCCCAATCAATGCGAAGGGCCCTACTGTCCCCAAGGAAAGTAGCGATCACCTGGCA GCCGCCGTTGCTTGA
AA sequence Show only first row Show all	>Lus10024644 pacid=23161662 polypeptide=Lus10024644 locus=Lus10024644.g ID=Lus10024644.BGIv1.0 annot-version=v1.0 MGRWVNRAIKNRFCPILESAQLRGEPIDLQDLLLRLTFDNICGLAFGEDPETLSPELPENGFAVSFDCATEATLQRFIVPELVWKLRKRLGLGMEVSMTQ SLDHIDGYLSKIINTRKLELAGLAKSTSSNGDPHDDLLSRFMKKKESYSEKFLQHVALNFILAGRDTSSTALSWFFFLVSQNPRVEEKILMEICTVLTKT RGEFLNPSSSDWLKEPLGFEEVDQLIYLKAALSETLRLYPSVPQDSKHVVADDILPSGARVPAGSSVTYSIYSMGRMKFIWGDDCHEFRPERWLTQDGTK FDVRDSYKFVAFNAGPRICLGKDLAYLQMKSITAAVLLRHRLTVVPGHRVEQKMSLTLFMKYGLVMDVRPRDLGPIVGKLSSPINAKGPTVPKESSDHLA AAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	0	1
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10002015 [exp]	1.0	0.9685
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	2.6	0.9152
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	4.0	0.9355
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	4.0	0.9282
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10031604 [exp]	5.8	0.8917
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	6.7	0.9118
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	7.7	0.9064
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	8.0	0.9144
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	8.1	0.9214
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	8.1	0.9058

Compare expression of checked genes

Lus10024644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.