Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63700 816 / 0 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 405 / 1e-130 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 361 / 1e-112 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 288 / 3e-86 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 284 / 2e-84 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 267 / 4e-78 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08500 259 / 6e-76 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 251 / 3e-73 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 239 / 3e-67 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 241 / 5e-66 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032279 [exp] 1513 / 0 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 796 / 0 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 763 / 0 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 700 / 0 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 662 / 0 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 422 / 6e-131 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 375 / 1e-119 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10019635 [exp] 355 / 2e-110 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 355 / 4e-110 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102900 [exp] 986 / 0 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 934 / 0 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 865 / 0 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 832 / 0 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 420 / 5e-136 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 416 / 2e-134 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G135100 [exp] 362 / 2e-113 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 360 / 5e-113 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 320 / 2e-96 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 317 / 1e-95 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024645 pacid=23161627 polypeptide=Lus10024645 locus=Lus10024645.g ID=Lus10024645.BGIv1.0 annot-version=v1.0 ATGCCTTGGTGGGGAAAGTCTTCATCAAAAGATCAAAAGAAGAAAGCAAACAAGGAAAGTATCATTGATGCAATACAGAGGAAATTCAGAAATGCAACCG AGGATAAGGGAACTGGTAGGACTGCTTGGAGACGTTCTAGGGATGTTATCTCTCTGTCCCGGGTGCCATCAAGATCTCCATCGCCATCGGCGCTAGTCTC CCGATGCCAAAGCTTTGCTGAAAGGTCTCATGCTCAACCACTTCCACTTCCTGGTGTACGTGGTACCCCTATTGTCCGATCTCATTCTGGAGCGAGTGGT TCTGCAAAGTCAGGTTCGGATGTAGGATCCAAACATTTGCAAGTGTTGCCTCTTCCGAAGACCGGTGGTAATGTTTCAAATCGGCTGGACCGAGTAAAAC TCGAAGTGGATATTGGAACTGCTTCTGTCTCTAGCGATAGTTCAAGTGATAGTGAAGACCAGTCAGATTCACGTCTCCTTAGTCCCTTGACATCAGACTA CGAAAATGGAAACAGAACAGCTGCCAATAGCCCTTCAAGCATGACTCAGAAGGATTGTTCTCCTCTTCTTAGCCGGAAGAACTCTGGAGAGATATTGAAG CATTCTGACTTCTCACTAAGTAATCAGTTGCCATCTGTATCGCCTAGAAGGGCACATCATGTACAGAATCTACAGATTCCTAGCAGAGGCACACTTTTTA GTGCCCCAGACAGTTCATTGTCAAGTCCTTCTAGGAGCCCCATCAGGGCATTCGGCACTGAGCAAGTTGTAAATACTGGTTTATTACTAGGTTCTGGCCA TTGTTCGAGTCCCGGTTCAGGTTATAATTCCGGACAGAACTCAATAGGTGGAGGAGAATTGTCAGGGCAGCTTTTCTGGCCTAACAGTAGATGCAGCCCT GAGTGTTCTCCTATACCGAGTCCTAGAATGACGAGTCCTGGTCCCAGCTCCAGAGTACAGAGTGGGGCTGTCACCCCTCACCATCCACGAGCTCGTGGGG TTTTGACTGAGTCACCTAGAGGCAGCAGGCAAGAAGAGTGCAAGAAACAGAGCCATCGATTACCTGTTCCCCCAATAACAATCTCTAATACTTGTCCTTT CTCTCCTGGTTATTCTGCTGCAACTTCTCCTTCACTACCACGGAGTCCTAATAGGGCAGATACCCCAACTAGCCCCGGTTCCCACTGGAAAAAGGGCCGT CCTTTAGGGAGAGGCACGTTTGGGGATGTGTTTCTTGGATTCAACAGTGAAAGTGGGGAGATGTGTGCAATGAAGGAAGTAACTCTTTTTTCGGATGATG CAAAATCAAGAGAAAGTGTACAGCAGCTTGGACAAGAAATCGCAATGCTGAGTCGCTTAAGGCATCCTAATATAGTGCAGTACTATGGAACTGAAACGGT GGAGGACAAGCTTTATATCTATTTGGAGTATGTGTCTGGTGGCTCCATTCATAAACTGCTTCAAGACTATGGTGCATTTGGTGAAATAGCCGTCCGTAAT TTCACTAAACAAATCTTGTCCGGTCTTGCCTATTTGCATGGTAAAAATACCGTTCACAGAGACATAAAGGGGGCAAACATTCTAGTCGATCCAAGTGGGC GGGTCAAAGTGGCAGATTTTGGGATGGCAAAGCATATTACTGGGCAATCATGTCCTTTATCATTCAAGGGAAGTCCTTACTGGATGGCACCTGAGGTGAT TAAGAATTCAAGTGGTTGTAATCTTGCTGTTGATATATGGAGCTTGGGGTGCACTGTTTTGGAGATGGCATCTGGAAAACCTCCGTGGAGCCAGTACGAA GGGGTTGCTGCTATGTTTAAGATTGGAAACAGTAGGGAGCTTCCAGCAGTTCCTGATGATTTATCAGACGATGGAAAGGACTTCATAATGCAGTGTTTAC AACGAAACCCATCACGCCGTCCTACCTCTTCCCAGCTCTTAGAACACCCTTTCGTGAAGAATATTGCATCATCGGAGAGGGTAGTCATGACTGCCGAGTC CTCTGAAATAACTGCAACCGGCAGATTAATGGGCATTGTACATGCAAGAAGCTTTGATACAGAAGCGATCTCCATTCATCAATCTGGAGCTTCGAGAACT GGTTCAGGATTCAGCGACTTCCATGCGCCCAGAAACAACATATCATGTCCAGTATCGCCAATTGGAAGCCCTCTTCAGTATACAAGGTCACCACAGCATA TGAGTGGAATGAGGTCTCCATCTCCCATATCTAGCCCCCACGCTGCCTCGGGTGCATCCACGCCACTTACCGGAGGAGGCTCATGGCAACCGGCATCCTT CATCCACGAAACCTCAGGAATGGTTCCGAGGTCCCAAAACGGCTTCTACACTGGTAGCTCGAGTCCCTATAGGGAGCCGAATCCTGACATGTTTCGACAA GGGTTGTCTCAAACCTCCCACATTTTCCGGGATATGAGCTCAGCGGACAACAATGGTGGACTCGGGAACCAGTTTGGACAATTCGGACTCCAAGACTTCA GGGAAGTTCCTACTTCACAGCCCGTGTTGGCCGATCGTGTGTCTCAGCAGCTTCTAAGGGAGATTGATAGGTTAAAACCGGCTCTGGATCTGAATCCGAG CTCCACAACTCACTGTTTCACTGTCCAGGGAGATTATATGCATCAAAGAAGGTCCTGA
AA sequence Show only first row Show all	>Lus10024645 pacid=23161627 polypeptide=Lus10024645 locus=Lus10024645.g ID=Lus10024645.BGIv1.0 annot-version=v1.0 MPWWGKSSSKDQKKKANKESIIDAIQRKFRNATEDKGTGRTAWRRSRDVISLSRVPSRSPSPSALVSRCQSFAERSHAQPLPLPGVRGTPIVRSHSGASG SAKSGSDVGSKHLQVLPLPKTGGNVSNRLDRVKLEVDIGTASVSSDSSSDSEDQSDSRLLSPLTSDYENGNRTAANSPSSMTQKDCSPLLSRKNSGEILK HSDFSLSNQLPSVSPRRAHHVQNLQIPSRGTLFSAPDSSLSSPSRSPIRAFGTEQVVNTGLLLGSGHCSSPGSGYNSGQNSIGGGELSGQLFWPNSRCSP ECSPIPSPRMTSPGPSSRVQSGAVTPHHPRARGVLTESPRGSRQEECKKQSHRLPVPPITISNTCPFSPGYSAATSPSLPRSPNRADTPTSPGSHWKKGR PLGRGTFGDVFLGFNSESGEMCAMKEVTLFSDDAKSRESVQQLGQEIAMLSRLRHPNIVQYYGTETVEDKLYIYLEYVSGGSIHKLLQDYGAFGEIAVRN FTKQILSGLAYLHGKNTVHRDIKGANILVDPSGRVKVADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSSGCNLAVDIWSLGCTVLEMASGKPPWSQYE GVAAMFKIGNSRELPAVPDDLSDDGKDFIMQCLQRNPSRRPTSSQLLEHPFVKNIASSERVVMTAESSEITATGRLMGIVHARSFDTEAISIHQSGASRT GSGFSDFHAPRNNISCPVSPIGSPLQYTRSPQHMSGMRSPSPISSPHAASGASTPLTGGGSWQPASFIHETSGMVPRSQNGFYTGSSSPYREPNPDMFRQ GLSQTSHIFRDMSSADNNGGLGNQFGQFGLQDFREVPTSQPVLADRVSQQLLREIDRLKPALDLNPSSTTHCFTVQGDYMHQRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	0	1
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	1.0	0.8342
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	1.4	0.7919
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	5.7	0.7713
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	6.7	0.7338
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10010571 [exp]	17.5	0.7511
AT2G47390			Prolyl oligopeptidase family p...		Lus10025026 [exp]	21.6	0.7654
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	25.0	0.7354
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	29.9	0.7494
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10002966 [exp]	37.8	0.6041
AT3G45830			unknown protein		Lus10036145 [exp]	38.0	0.7531

Compare expression of checked genes

Lus10024645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.