Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11220 305 / 1e-102 ELO1 ELONGATA 1, Paxneb protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032284 [exp] 503 / 7e-179 AT3G11220 436 / 9e-152 ELONGATA 1, Paxneb protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189500 [exp] 406 / 2e-142 AT3G11220 453 / 2e-160 ELONGATA 1, Paxneb protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05625 [flax] [poplar] PAXNEB PAXNEB protein
Representative CDS sequence Show only first row Show all	>Lus10024652 pacid=23161604 polypeptide=Lus10024652 locus=Lus10024652.g ID=Lus10024652.BGIv1.0 annot-version=v1.0 ATGGCTACGACTAAGACTAGGACAAGTAGCTTTTCTCGCAACCTACCGGCAGCTTCTGCATCTTCTGCCCAAAGCCCTGAAATCAAGTGCGGCCCTAATG GAACATATTTTGTGTCCTCTGGAATACCCGATCTCGACAGAACACTAGGTGGTGGTTTTCCTGTGGGAAGCTTGATCATGGTGATGGAAGATTCTGAAGC ACCTCATCACATGCTTCTACTCAGAAATTTCATGTCTCAGGGACTTGTCCACAAACAGCCTCTTCTCTACGCTAGTCCATCCAATGACCCTAGAGCGTTC CTGGGCACTTTGCCTACTCCTTCCTCCTCCTCTGCCAAAGATGACAAATCCCGCAGCCATGATACTGAACAGGACAAGGGTTTGAGAATAGCTTGGCAAT ACAAGAAGTACTTTGGTGATAACCAGTCGGGTTTAAGTGGTCAAAGAGATAGTAAGCAAGATTTCTGCAACGAGTTTGACTTGCGGAGGCCATTGGATAG ACATTTTTTCACAGGAAACCATGTAGAGTGTATTTCTACCAAAGCTTTACCAAATATTGCTGCTCTTCAGGAGCGCTGTTCTTCATTTTTGTCCCAGTTT CCCAGGAATGACGCGAGCATTTCTTGCACTGGTCGTATTGCCATTCAGTCATTGTGTGCTCCTCAATGTGAAACTTCCAATATGGTCGGTGGGAACGAAG ATAAGGAGTTAGCCAAACTCTTGACGGGATACCAGGACATTGTTGGATTTCTCAACGTACACAAACTGCCACGCATCAACACTCAGGTTCCTGCCGTTTT GGAGGCGACAACATTGTCGATAAAGCTGCAAAAACGGAGGTTTTTGGTATTGGAATGTTTGAATCAAGCCCCTATTGATGGTTCTGGCGGTAGCTCTTAT GGCACATCCGGAAGTTGTTCGGGTTCCTCCAAGTCCAGCTCCCTTGACTTTTAG
AA sequence Show only first row Show all	>Lus10024652 pacid=23161604 polypeptide=Lus10024652 locus=Lus10024652.g ID=Lus10024652.BGIv1.0 annot-version=v1.0 MATTKTRTSSFSRNLPAASASSAQSPEIKCGPNGTYFVSSGIPDLDRTLGGGFPVGSLIMVMEDSEAPHHMLLLRNFMSQGLVHKQPLLYASPSNDPRAF LGTLPTPSSSSAKDDKSRSHDTEQDKGLRIAWQYKKYFGDNQSGLSGQRDSKQDFCNEFDLRRPLDRHFFTGNHVECISTKALPNIAALQERCSSFLSQF PRNDASISCTGRIAIQSLCAPQCETSNMVGGNEDKELAKLLTGYQDIVGFLNVHKLPRINTQVPAVLEATTLSIKLQKRRFLVLECLNQAPIDGSGGSSY GTSGSCSGSSKSSSLDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10024652 [exp]	0	1
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	9.6	0.8310
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	17.8	0.8165
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	22.4	0.8024
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	27.7	0.8121
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	28.1	0.8131
AT5G14610			DEAD box RNA helicase family p...		Lus10001272 [exp]	43.7	0.7919
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	61.0	0.7843
AT3G53320			unknown protein		Lus10023170 [exp]	71.6	0.7850
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10040866 [exp]	82.3	0.7800
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Lus10008150 [exp]	84.1	0.7771

Compare expression of checked genes

Lus10024652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.