Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63690 744 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 683 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT2G43070 468 / 1e-160 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 436 / 3e-148 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 100 / 1e-22 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 94 / 1e-20 ATSPP signal peptide peptidase (.1) AT2G30290 45 / 0.0001 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT2G14720 44 / 0.0004 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT2G14740 43 / 0.0004 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032285 [exp] 1019 / 0 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10031104 [exp] 786 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10017796 [exp] 711 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10018834 [exp] 594 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 545 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 533 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10001154 [exp] 466 / 5e-160 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 333 / 2e-110 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 198 / 5e-59 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128500 [exp] 794 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 774 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 726 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 712 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.002G232200 [exp] 488 / 9e-169 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 476 / 6e-164 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 104 / 4e-24 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 100 / 5e-23 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 94 / 6e-21 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 94 / 9e-21 AT2G03120 542 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10024653 pacid=23161589 polypeptide=Lus10024653 locus=Lus10024653.g ID=Lus10024653.BGIv1.0 annot-version=v1.0 ATGGATCTGCAGAAGCTGAGTTTGGTGGTCTGTTTTGCTGCTCTGATTTCGCTCTTATCTAGCCCCTATCCTGTCTTAGCAGGGGACGTAGTTCACGACG ATGATTCAGCTCCAAAGAGACCTGGCTGTGACAATGACTTCGCTCTGGTTAAAGTGCTTGCTTCTGTAAACGGCCAAGAGGATGCTGAATTTGGTGGTGT AGGAGCAAGATTTGGGGCTACTGTTGGATCAGATAAGGAGAATGCTAGGAAAACACATCTCACTCTTTCAGATCCCCAAAGTTGTTGTACTACACCAAAG AACAAGCTTGCCGGAGACGTCGTATTGGTTAATCGTGGCAATTGCACGTTTACTGCAAAAGCTATTAACGCAGAGGCAGCTGGCGCTTCTGCCGTTCTTA TAGTAAATGATGAAAATGAGCTTTATGAGATGGTCTGTGACGCAGATGAAACAGATTTAGATATAGGCATACCTGTTGTTATGATACCTAAAGATGCGGG TGTGTTCTTGGAAAAACTGCTATCAAGCAATGCATCAGTGTCCGTTCAGATGTACTCTCCAGATAGGCCACTAATTGAGTTATCCGAAGTGTTCCTGTGG TTGATGGCTGTTGGCACTGTTTTATGTGCATCCTATTGGTCTGCACGGAGTGCCAAAGAATCTGCCATTGAAGAAGAAAAACTGCTTAGGCGTGCTGTGG AAGAACCTCCCAGTACAAGAGCTGATTCCAACAGTATCGTTGACATCAATACAACCTCTGCTGTGCTGTTTGTTGTCGTTGCTTCCTGCTTCTTGGTCTT ACTTTATAAATTTATGTCATACTGGTTCGTTGAGCTTCTGGTGATACTTTTCTGCATAGGCGGGGTTGAGGGTCTCCAAACTTGCTTGGTTGCTTTCTTG TCGAGGTGGTTCAAGCGCGCCAGTGATTCATACGTTGAAATTCCCGTGTTGGGATACTTTTCATACTTGACTTTGGCGGTATCTCCATTATGCATTGCCT TTGCTGTTGTTTGGGCTGTTTATCGCAATGCCTCTTTCGCCTGGATAGGTCAAGATGTGCTTGGAATCGCTCTGATAATCACTGTTCTTCAAGTTGTCCA GATACCAAATCTCAAGGTGGGCACAGTTCTTCTCAGTTGTGCATTCCTCTACGACATCTTTTGGGTGTTTTTGTCCGAGATGCTGTTCAATGTGAGCGTC ATGATCGCGGTAGCTAGTGGTGGCGATAGCGGAGAGGATGGAATTCCAATGCTCTTAAAAATGCCACGCTTCTTGGACCCTTGGGGCGGTTACAGTGTTA TAGGCTTCGGTGACATACTTCTACCCGGTTTGCTTGTAGCATTCTCACTCAGGTATGATTGGCTGGCACGCAAGGGTCTTCTAGCTGGATACTTCTTGTA CACAATCATTGCTTATGGATTAGGTCTTCTGGTCACATATGTTGCACTGTACTTCATGGATGGACATGGTCAACCAGCATTGCTCTACATTGTGCCCTTC ACCCTTGGAACGGTTTTGACGCTGGCGAAGGCGAGAGGAGAGCTTCGGATCCTGTGGATGCAAGGCCGGCCAGAAAGACTGAATCTTTAA
AA sequence Show only first row Show all	>Lus10024653 pacid=23161589 polypeptide=Lus10024653 locus=Lus10024653.g ID=Lus10024653.BGIv1.0 annot-version=v1.0 MDLQKLSLVVCFAALISLLSSPYPVLAGDVVHDDDSAPKRPGCDNDFALVKVLASVNGQEDAEFGGVGARFGATVGSDKENARKTHLTLSDPQSCCTTPK NKLAGDVVLVNRGNCTFTAKAINAEAAGASAVLIVNDENELYEMVCDADETDLDIGIPVVMIPKDAGVFLEKLLSSNASVSVQMYSPDRPLIELSEVFLW LMAVGTVLCASYWSARSAKESAIEEEKLLRRAVEEPPSTRADSNSIVDINTTSAVLFVVVASCFLVLLYKFMSYWFVELLVILFCIGGVEGLQTCLVAFL SRWFKRASDSYVEIPVLGYFSYLTLAVSPLCIAFAVVWAVYRNASFAWIGQDVLGIALIITVLQVVQIPNLKVGTVLLSCAFLYDIFWVFLSEMLFNVSV MIAVASGGDSGEDGIPMLLKMPRFLDPWGGYSVIGFGDILLPGLLVAFSLRYDWLARKGLLAGYFLYTIIAYGLGLLVTYVALYFMDGHGQPALLYIVPF TLGTVLTLAKARGELRILWMQGRPERLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	0	1
AT1G24560			unknown protein		Lus10038257 [exp]	1.0	0.8939
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	3.2	0.8805
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	6.3	0.8694
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	7.2	0.8461
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	7.7	0.8474
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	8.3	0.8714
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	10.2	0.8551
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	10.7	0.8380
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	11.0	0.8106
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	11.1	0.8186

Compare expression of checked genes

Lus10024653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.