Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23460 1484 / 0 Adaptin family protein (.1) AT4G11380 1462 / 0 Adaptin family protein (.1.2) AT5G11490 324 / 3e-97 adaptin family protein (.1.2) AT3G55480 126 / 2e-29 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) AT4G31490 58 / 2e-08 Coatomer, beta subunit (.1) AT4G31480 58 / 3e-08 Coatomer, beta subunit (.1.2) AT1G60070 53 / 8e-07 Adaptor protein complex AP-1, gamma subunit (.1.2) AT5G22780 50 / 1e-05 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 50 / 1e-05 ALPHA-ADR alpha-adaptin (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032286 [exp] 1702 / 0 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 1596 / 0 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10028775 [exp] 1586 / 0 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 340 / 3e-99 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 218 / 5e-59 AT5G11490 897 / 0.0 adaptin family protein (.1.2) Lus10023408 [exp] 127 / 2e-29 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10040289 [exp] 125 / 4e-29 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10015105 [exp] 70 / 7e-12 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10031570 [exp] 70 / 9e-12 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130400 [exp] 1567 / 0 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.001G101400 [exp] 1549 / 0 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.006G243100 [exp] 327 / 3e-98 AT5G11490 1355 / 0.0 adaptin family protein (.1.2) Potri.010G202800 [exp] 122 / 4e-28 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Potri.018G007400 [exp] 76 / 7e-14 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 75 / 1e-13 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.004G189700 [exp] 54 / 6e-07 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 48 / 3e-05 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.006G092800 [exp] 47 / 8e-05 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.016G104700 [exp] 46 / 0.0001 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [flax] [poplar] APCOP-app_sub PF09066 [flax] [poplar] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024654 pacid=23161608 polypeptide=Lus10024654 locus=Lus10024654.g ID=Lus10024654.BGIv1.0 annot-version=v1.0 ATGAGCGGTCATGATTCCAAGTACTTCTCCACTACGAAGAAGGGAGAGATCCCTGAACTTAAAGAGGAGCTCAATTCCCAGTACAAGGATAAGAGAAAGG ATGCGGTTAAGAAAGTGATTGCTGCAATGACTGTTGGGAAGGATGTCTCTTCACTCTTCACAGATGTGGTGAACTGTATGCAAACTGAGAATTTGGAGTT GAAGAAACTAGTTTATCTTTATCTGATAAACTATGCTAAAAGCCAGCCCGATCTTGCAATTCTTGCTGTAAATACATTTGTGAAGGATTCACAAGATCCA AATCCCTTGATCCGAGCTTTGGCTGTGCGGACAATGGGCTGCATTCGTGTGGACAAAATCACAGAGTATTTGTGCGATCCCCTTCAGAGGTGCCTCAAGG ATGATGATCCTTATGTTCGCAAGACAGCAGCAATTTGTGTTGCTAAACTTTATGACATAAATGCCGAACTAGTTGAGGACAGGGGATTTCTTGATTCTCT CAAGGATTTAATTTCAGACAATAACCCAATGGTCGTAGCAAATGCTGTGGCAGCTCTAGCAGAAATTCAGGAGAGCAGTGCCAGGCCAATTTTTGAGATT ACCAGTCAAACCCTTACAAAGTTGCTTACTGCTCTAAATGAGTGCACAGAGTGGGGCCAAGTGTTTATTTTGGATGCCCTTTCGAGATACAAGGCCGAAG ATGCTCGTGAAGCTGAAAATATAGTAGAAAGAGTTACTCCAAGGCTACAGCATGCCAATTGTGCAGTTGTTCTTTCAGCTGTCAAGATGATCCTTCAACA AATGGAACTCATTACGAGCACTGATGTAGTACGGAATCTTTGCAAGAAGATGGCTCCTCCTCTCGTGACGCTGCTATCAGCAGAACCTGAGATTCAATAT GTTGCACTAAGGAACATAAACCTGATTGTTCAAAGGAGACCGACAATCCTTGCTCATGAAATCAAGGTATTCTTCTGCAAGTACAATGATCCTATTTATG TAAAGATGGAGAAGCTGGAAATTATGATAAAGCTTGCTTCTGACCGCAATATTGACCAGGTTCTTTTGGAGTTCAAAGAGTATGCAACAGAAGTTGATGT AGATTTTGTTAGAAAAGCTGTACGAGCCATTGGCCGTTGTGCTATAAAGTTAGAGAGAGCAGCTGAAAGATGCATCAGCGTTCTGCTTGAACTTATCAAG ATCAAAGTAAATTATGTAGTTCAGGAGGCTATTATTGTCATTAAAGATATATTTAGAAGATATCCAAATACGTACGAATCTATCATTGCAACACTGTGTG AAAGCTTAGATACTTTGGATGAACCAGAAGCTAAGGCATCAATGATCTGGATAATTGGTGAATATGCTGAAAGAATTGACAATGCTGATGAACTCCTAGA AAGCTTCTTGGAGAGTTTCCCCGAAGAGCCTGCTCAAGTGCAGTTGCAATTATTGACTGCAACTGTAAAACTCTTTCTCAAGAAGCCAACTGAAGGCCCT CAGCAAATGATTCAGGTTGTTCTGAATAATGCCACAGTAGAGACAGACAATCCTGATCTGAGGGACCGTGCATATATTTACTGGCGACTATTATCAACTG ATCCAGAGGCAGCTAAGGACGTGGTGTTAGCAGAAAAGCCAGTGATCAGTGATGATTCAAACCAACTTGATCCTTCTTTACTCGATGAGCTTCTTGCAAA CATTGCCACATTGTCCTCTGTGTATCACAAGCTACCAGAAGCATTTGTTACTCGTGTGAGGACAACGGCGGAGAAGACTGATGAAGAGGAATATCCTGAT GGAGCTGAAGCAGGGTATGCTGAGTCATCATCCTCTCTTTCTGTTGATGGAGCTGCATCACCTGTTCCTCAAGCTGGAACAAGGCAGATGACTCCTGCAA CAGTTAACCCTCCACGAGCTGCCCCAGTGCCGGACTTGATGGGTGATCTTATGGGTCTCGAGGGCAGTGCTGCAATTGTTCCAGTCGACCAGCCCTCTAC TCCTTCCGGCCCTCCCTTGCCTGTTGTTCTACCAGCAGCATCCGCACAGGGTTTACAAATCAGTGCTCAGCTAACACGACGAGACGGTCAAATTTATTAC AGCATGTTGTTTGAGAACAACACACAGCTCTCACTCGACGGCTTCATGATCCAATTCAACAAGAATACACTTGGTCTTGCTGCTGGTGGACCTTTGCAGG TTCCACAACTGCAACCTGGGTCGTCAACAACCACTCTACTCCCCATGGTTATGCTCCAAAATATGTCTGCCGGTCCACCGAGCTCTCTTTTACAAGTTGC TGTGAAGAATAACCAACAGCAAGTATGGTACTACAATGACAAAATCTCGTTCCACGTGTTCTTCAGTGAAGATGGGAGGATGGAACGCGGATCGTTCCTC GAGACATGGAGGTCCCTCCCCGACACAAACGAAGTCTCGAAGGACTTTCCCAGCATCGTGTTAAACAATGCAGATATGATGGTGGAACGGCTAGCTGCCT CGAACATGTTCTTCATCGCCAAGCGAAAACACGCGAACCAAGATGTGTTCTACTTTGCCACCAAAATCCCCCGCAGCATCCCCTTCTTAGTTGAGCTCAC TACAGCTTTAGGAACCCCTGGAGTCAAGTGTGCGATCAAGACTCCCAACCCTGAGATGTCGCCACTGTTCTTCGAGGCAGTCGAGGCCCTCCTCATGGCT TGA
AA sequence Show only first row Show all	>Lus10024654 pacid=23161608 polypeptide=Lus10024654 locus=Lus10024654.g ID=Lus10024654.BGIv1.0 annot-version=v1.0 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLDSLKDLISDNNPMVVANAVAALAEIQESSARPIFEI TSQTLTKLLTALNECTEWGQVFILDALSRYKAEDAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGP QQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKLPEAFVTRVRTTAEKTDEEEYPD GAEAGYAESSSSLSVDGAASPVPQAGTRQMTPATVNPPRAAPVPDLMGDLMGLEGSAAIVPVDQPSTPSGPPLPVVLPAASAQGLQISAQLTRRDGQIYY SMLFENNTQLSLDGFMIQFNKNTLGLAAGGPLQVPQLQPGSSTTTLLPMVMLQNMSAGPPSSLLQVAVKNNQQQVWYYNDKISFHVFFSEDGRMERGSFL ETWRSLPDTNEVSKDFPSIVLNNADMMVERLAASNMFFIAKRKHANQDVFYFATKIPRSIPFLVELTTALGTPGVKCAIKTPNPEMSPLFFEAVEALLMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Lus10032286 [exp]	1.4	0.9449
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10017329 [exp]	2.4	0.9305
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	3.0	0.9293
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	4.0	0.9081
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	4.0	0.9275
AT5G51300			splicing factor-related (.1.2....		Lus10038932 [exp]	7.3	0.8942
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Lus10036849 [exp]	8.5	0.8551
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10015440 [exp]	8.7	0.8913
AT2G41820			Leucine-rich repeat protein ki...		Lus10012193 [exp]	9.6	0.8655
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	9.8	0.9117

Compare expression of checked genes

Lus10024654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.