Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63820 178 / 9e-54 CCT motif family protein (.1) AT5G41380 166 / 6e-49 CCT motif family protein (.1) AT2G33350 97 / 4e-22 CCT motif family protein (.1.2) AT3G12890 91 / 6e-21 ASML2 activator of spomin::LUC2 (.1) AT1G04500 90 / 5e-20 CCT motif family protein (.1) AT5G59990 86 / 2e-19 CCT motif family protein (.1.2) AT4G27900 75 / 4e-15 CCT motif family protein (.1.2) AT5G53420 71 / 2e-14 CCT motif family protein (.1.2.3) AT2G24790 64 / 3e-11 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G15850 62 / 1e-10 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032288 [exp] 493 / 7e-177 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10014478 [exp] 93 / 6e-22 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10023727 [exp] 92 / 3e-20 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10031192 [exp] 88 / 2e-19 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1) Lus10031770 [exp] 87 / 3e-19 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1) Lus10028137 [exp] 79 / 2e-16 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2) Lus10014919 [exp] 74 / 1e-14 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3) Lus10027344 [exp] 74 / 1e-14 AT5G53420 209 / 3e-67 CCT motif family protein (.1.2.3) Lus10005008 [exp] 71 / 9e-14 AT5G53420 254 / 2e-84 CCT motif family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130500 [exp] 241 / 2e-77 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.001G101200 [exp] 238 / 2e-76 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.001G233600 [exp] 118 / 3e-31 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.010G066100 [exp] 108 / 2e-26 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.007G066800 [exp] 101 / 1e-24 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.008G171500 [exp] 103 / 2e-24 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.005G097700 [exp] 95 / 3e-22 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1) Potri.012G014000 [exp] 87 / 3e-19 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.015G014000 [exp] 79 / 2e-16 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3) Potri.001G136700 [exp] 76 / 2e-15 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10024655 pacid=23161553 polypeptide=Lus10024655 locus=Lus10024655.g ID=Lus10024655.BGIv1.0 annot-version=v1.0 ATGTCTTCTGATCTGTTCGTCCTCGACGTCAACTCCAAATTCTTCAACCATTCTTCCAACAACAGCCCGGAAATGGCAATCTCCTCCTCCGACGGCGGCG GCGACCTCTTCTTCTCCGAGCAACTCTGTTCGTCCTTTCCCGGCGACGGCGAATCTTTCCTCGACATCTTCCAGGAATTCAAATCCGTCGCTAATGGCAC TACTTCGTCGATGGCGGCGAGCAGCCAGCTCCAGAGCTTGACAATCGGCTACGACGACAACGGCTGCCGTCTGGAGGCGGAAAACTGCTACAGCGGAGGC GGAATGGACATGGACGTGAAAACAGAGGAATGCCCTATGGGTTTGGAGAGTTTCATCGCCAGTTACGGCTCCGCAGCGGCGGCGGATAATAATACTACCA ACGGCGGCGTCGTCGACGGCGGGAACAACTTGGGGAAGTCGATGATGCAGAGAAGCTACAGCGGCGATTGTTTCGGCAGCGGCGGCGACGCAAGTTTCCT CTTCCAGCCGAGATTCCATTACCAGAACCGACTACTCAGCTCCCCAGAGAGTAACTTCCTCGCCGGCCAGTTGAGAAGAGTTTGCAGCACCGGCGATTTG CAAAACACTAGAAGAGCAAAAACGACGTCGCAGAGGTCGCTTTCGAGCCCTTTAGCGATTGAGAAATCGCTTACGGAAGAATCCCAGCTGAAAGTTGGGC GATACAGTGCTGAAGAGAGACAAGAGAGGATCTCCAAGTACAGAGCCAAGCGTAGCCAGAGGAACTTCAACAAGACTATCAAGTATGCATGCCGGAAGAC GCTAGCGGACAACCGACCAAGAATACGCGGCAGATTCGCGCGTAACGACGAAATTATATACTGTGAGAATATTATCAAAGGAGGAGGAGCTGCTGCATGC TCCTCTAGAGACGACGACGAAGATGAACTATGGCAGTTTGATGGGTTGCATGAGGAAGAATTAGGTGAAGGAAACAAAGGAAGCTTTGGATCAGAAGCTC AGTTGCAGTTCCATGGATATTGA
AA sequence Show only first row Show all	>Lus10024655 pacid=23161553 polypeptide=Lus10024655 locus=Lus10024655.g ID=Lus10024655.BGIv1.0 annot-version=v1.0 MSSDLFVLDVNSKFFNHSSNNSPEMAISSSDGGGDLFFSEQLCSSFPGDGESFLDIFQEFKSVANGTTSSMAASSQLQSLTIGYDDNGCRLEAENCYSGG GMDMDVKTEECPMGLESFIASYGSAAAADNNTTNGGVVDGGNNLGKSMMQRSYSGDCFGSGGDASFLFQPRFHYQNRLLSSPESNFLAGQLRRVCSTGDL QNTRRAKTTSQRSLSSPLAIEKSLTEESQLKVGRYSAEERQERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDEIIYCENIIKGGGAAAC SSRDDDEDELWQFDGLHEEELGEGNKGSFGSEAQLQFHGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	2.0	0.8174
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	3.0	0.7570
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10041961 [exp]	5.1	0.7691
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10035706 [exp]	7.7	0.7548
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	8.4	0.7165
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	9.4	0.7057
					Lus10041320 [exp]	14.7	0.7279
AT4G10440			S-adenosyl-L-methionine-depend...		Lus10008298 [exp]	14.7	0.6516
AT3G14880			unknown protein		Lus10039193 [exp]	21.8	0.7302
AT1G63060			unknown protein		Lus10001796 [exp]	25.8	0.6688

Compare expression of checked genes

Lus10024655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.