Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10530 483 / 2e-169 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 59 / 1e-09 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G11160 54 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 54 / 1e-07 transducin family protein / WD-40 repeat family protein (.1) AT5G23430 53 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 53 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G04510 52 / 3e-07 MAC3A MOS4-associated complex 3A (.1.2) AT1G61210 52 / 5e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G21390 49 / 7e-06 Coatomer, alpha subunit (.1) AT5G25150 48 / 7e-06 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037324 [exp] 677 / 0 AT3G10530 718 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035740 [exp] 499 / 2e-177 AT3G10530 431 / 2e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032289 [exp] 405 / 1e-139 AT3G10530 443 / 4e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035742 [exp] 74 / 3e-15 AT3G10530 214 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014477 [exp] 55 / 4e-08 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10023728 [exp] 53 / 2e-07 AT2G33340 786 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10012475 [exp] 50 / 2e-06 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10004167 [exp] 50 / 2e-06 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 50 / 2e-06 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232500 [exp] 545 / 0 AT3G10530 727 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G029100 [exp] 528 / 0 AT3G10530 732 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G066000 [exp] 56 / 2e-08 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.008G171600 [exp] 55 / 4e-08 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G255400 [exp] 52 / 4e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 48 / 9e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 47 / 1e-05 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 47 / 1e-05 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 47 / 2e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 47 / 2e-05 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08149 [flax] [poplar] BING4CT BING4CT (NUC141) domain
Representative CDS sequence Show only first row Show all	>Lus10024656 pacid=23161655 polypeptide=Lus10024656 locus=Lus10024656.g ID=Lus10024656.BGIv1.0 annot-version=v1.0 ATGAAATCCGAAATGGAATTATCTGCAGAGTTCGATTTGAATCTGCAGAAGTACCTTAGAGGAAAAGCTCCTGACCTAGAGGCACTGAAAGATAAAAAGT TAAAAGGTCGGCAAATTGTTAAAGAAGAATTACATGAAAAGTCTGCAAATGTTGCTGCCAAGCATGAAAAGTGGCTTAAACCAAGTGAGGGAAGCTTTAT CGAGGCTGAAGGCATTGAGAAGACATGGAGGATTAAACAGAATGAGATTGCTCGTGAAGTAAATGTTAAAAGTTCAAGTAATCAGTACGATATAGTGTTG CCAGATCTTGGACCCTACACTCTGGATTTCACTGCCAGTGGTCGATACATAGCCCTTGATGGACGCAAGGGGCATGTGGCTATTGTAGACCTGATAAGTA TGGACAAAATTAGAGAGATGCAGGCTAAAGAAACAGTGCGAGATGTTGTGTTTTTGCACAATGAGACGTTCTTTGCAGTTGCACAGAAAAAGTACCCTTA TATTTATAACCGGGATGGAACTGAGCTTCATTGTTTAAAGGATGTAACAACGGGTCAGATGATAGGTAACTTCCGTACCGGGATGGGACATGCTGACGCG ATGCAGGTCAACCCTTTCAACGGCGTCTTAGCAGTAGGTCACTCCGGTGGCACAGTAACCATGTGGAAGCCCACCAGTGCTGCTCCCCTAGTCAAGATGC TCTGCCATCCTGGTCCAATCTCTGCCCTAGCATTCCACCCGAATGGCCATCTCATGGTGACAGCCGGATGGGAGAAGAAAATCAAGATTTGGGACCTGAG GAAATTCGAGGTCGTCCAAACCATACCAGGGCATCATGCCAAGACTTTGGATTTCAGCCAAAAGGGTTTACTAGCTGCAGGAACAGGGTCGTATGCTCAT GTTTTCGGGAACTTGTCAGGATCGGGAACTTACAGCCGGTACATGGGTCATTCGATGGCAAAAGGGTACCAGATAGGGAAAGTATCGTTTAGGCCTTACG AAGATGTTCTGGTGTTAGGACACTCGAGGGGTTGGTCCTCTGTTCTCATTCCAGGAGAAAGGTGA
AA sequence Show only first row Show all	>Lus10024656 pacid=23161655 polypeptide=Lus10024656 locus=Lus10024656.g ID=Lus10024656.BGIv1.0 annot-version=v1.0 MKSEMELSAEFDLNLQKYLRGKAPDLEALKDKKLKGRQIVKEELHEKSANVAAKHEKWLKPSEGSFIEAEGIEKTWRIKQNEIAREVNVKSSSNQYDIVL PDLGPYTLDFTASGRYIALDGRKGHVAIVDLISMDKIREMQAKETVRDVVFLHNETFFAVAQKKYPYIYNRDGTELHCLKDVTTGQMIGNFRTGMGHADA MQVNPFNGVLAVGHSGGTVTMWKPTSAAPLVKMLCHPGPISALAFHPNGHLMVTAGWEKKIKIWDLRKFEVVQTIPGHHAKTLDFSQKGLLAAGTGSYAH VFGNLSGSGTYSRYMGHSMAKGYQIGKVSFRPYEDVLVLGHSRGWSSVLIPGER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10530			Transducin/WD40 repeat-like su...		Lus10024656 [exp]	0	1
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	1.0	0.8871
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	1.4	0.8618
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	1.7	0.8462
AT5G66050			Wound-responsive family protei...		Lus10041852 [exp]	2.0	0.8362
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10008755 [exp]	4.9	0.8159
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	7.7	0.8238
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	9.5	0.8056
AT3G20720			unknown protein		Lus10011166 [exp]	9.7	0.8261
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	12.4	0.8237
AT2G47830			Cation efflux family protein (...		Lus10000033 [exp]	13.7	0.7786

Compare expression of checked genes

Lus10024656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.