Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61460 189 / 7e-62 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G63840 169 / 3e-54 RING/U-box superfamily protein (.1) AT5G41400 152 / 4e-47 RING/U-box superfamily protein (.1) AT4G11360 112 / 5e-32 RHA1B RING-H2 finger A1B (.1) AT4G11370 111 / 3e-31 RHA1A RING-H2 finger A1A (.1) AT4G00305 90 / 1e-23 RING/U-box superfamily protein (.1) AT3G43430 80 / 5e-19 RING/U-box superfamily protein (.1) AT5G20885 75 / 4e-17 RING/U-box superfamily protein (.1) AT1G33480 71 / 6e-15 RING/U-box superfamily protein (.1) AT4G10150 67 / 8e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032290 [exp] 325 / 1e-115 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10017510 [exp] 232 / 1e-78 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 221 / 3e-74 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10036378 [exp] 172 / 1e-54 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10008283 [exp] 71 / 1e-15 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10043353 [exp] 69 / 2e-14 AT5G20885 157 / 4e-49 RING/U-box superfamily protein (.1) Lus10023617 [exp] 67 / 2e-13 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10019507 [exp] 66 / 2e-13 AT5G20885 162 / 5e-51 RING/U-box superfamily protein (.1) Lus10029456 [exp] 62 / 1e-12 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130900 [exp] 234 / 2e-79 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.001G101000 [exp] 220 / 4e-74 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.014G087700 [exp] 179 / 6e-58 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.002G161900 [exp] 176 / 7e-57 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.007G086300 [exp] 73 / 1e-16 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G086200 [exp] 72 / 3e-16 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.005G081300 [exp] 71 / 1e-15 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.011G150800 [exp] 71 / 2e-15 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.009G170460 [exp] 70 / 2e-15 AT4G38140 85 / 9e-22 RING/U-box superfamily protein (.1) Potri.006G217000 [exp] 70 / 3e-15 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10024657 pacid=23161574 polypeptide=Lus10024657 locus=Lus10024657.g ID=Lus10024657.BGIv1.0 annot-version=v1.0 ATGGGGTTCCCCATAGGATACACGGAGATGCTCCTCCCAAAGTTCCTAATCCACACTCTCTCCATCCTCTCCTTCCTCCGGAAAGTCATCAACACGCTCT TCCGCTACCTGGGCCTCCCCGACTTCCTCGAGCCCAACATCTCCTGGTCTCCCTCCGCCGCTGATTCATCATCGGCGTTCCCCGATTCGCTACATTATCC CGCCGGGTCGGCGGCGGGTCTGGAGCGGTCGATGTCGGCGGTGCTGATCCGGGAGATCCTCCCCGTGGTGAAGTTCTCGGAGCTGGTGGACCCGCCGGAG AGCTGCGCGGTGTGCCTGTACGACTTCGAGGAGGAGGATGAGATCAGGAATCTGGCTAATTGCCGGCATGTTTTCCACCGGAGCTGTTTGGATCGGTGGA TGGGGTACGACCGGAGGACGTGCCCGCTGTGCCGGACGGCGGTGATCCCCGACGACGTGCAGGAGAGCTTCAACGAGAAGTTCTGGTCCGCCTCTGGGAT CCCTGATTTCTACGGCGAGTTCTCCCAATTCGCTGAATAG
AA sequence Show only first row Show all	>Lus10024657 pacid=23161574 polypeptide=Lus10024657 locus=Lus10024657.g ID=Lus10024657.BGIv1.0 annot-version=v1.0 MGFPIGYTEMLLPKFLIHTLSILSFLRKVINTLFRYLGLPDFLEPNISWSPSAADSSSAFPDSLHYPAGSAAGLERSMSAVLIREILPVVKFSELVDPPE SCAVCLYDFEEEDEIRNLANCRHVFHRSCLDRWMGYDRRTCPLCRTAVIPDDVQESFNEKFWSASGIPDFYGEFSQFAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	0	1
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10032290 [exp]	1.0	0.9644
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10030884 [exp]	3.2	0.8982
AT3G22530			unknown protein		Lus10004901 [exp]	4.9	0.8928
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	5.5	0.8964
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	7.3	0.8946
AT3G57120			Protein kinase superfamily pro...		Lus10021451 [exp]	7.6	0.8639
AT5G03110			unknown protein		Lus10026490 [exp]	8.8	0.8945
AT5G03110			unknown protein		Lus10019920 [exp]	9.2	0.8960
AT4G33640			unknown protein		Lus10007087 [exp]	11.8	0.8804
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	13.3	0.8963

Compare expression of checked genes

Lus10024657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.