Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63850 647 / 0 BTB/POZ domain-containing protein (.1) AT5G60050 390 / 9e-130 BTB/POZ domain-containing protein (.1) AT3G50780 337 / 6e-109 unknown protein AT2G13690 235 / 7e-70 PRLI-interacting factor, putative (.1) AT3G05675 79 / 2e-15 BTB/POZ domain-containing protein (.1.2) AT4G10800 44 / 0.0001 unknown protein AT3G19920 42 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017511 [exp] 775 / 0 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 753 / 0 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 358 / 6e-117 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 355 / 3e-116 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 348 / 1e-113 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 266 / 4e-84 AT3G50780 408 / 1e-140 unknown protein Lus10033484 [exp] 215 / 6e-62 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 213 / 2e-61 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 99 / 1e-21 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100900 [exp] 720 / 0 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 689 / 0 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 369 / 3e-121 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 368 / 3e-121 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 362 / 2e-118 AT3G50780 654 / 0.0 unknown protein Potri.007G109300 [exp] 261 / 1e-79 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.005G058700 [exp] 261 / 2e-79 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 110 / 2e-25 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 62 / 5e-10 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 48 / 1e-05 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024658 pacid=23161557 polypeptide=Lus10024658 locus=Lus10024658.g ID=Lus10024658.BGIv1.0 annot-version=v1.0 ATGGCCACCACTTCCATTCCCACCACCACCACCACCACAACCACTCCCTCTCCTTCTCCATCTCCCACCACCGTCGCCGCTGCCGCCAATACCCGCGCCC ATCTCACTGTCCAGGCCCAACCCATCAAGCCCAAACGCCGCAATTACCGCGAAACCACTATTTCCTCCTCCGCCTCCGCCGTCGAAGAAGAATCCTCCGC CGCCTCGTTGTTTGAGATTCGCTTTGATTCTTCTCCGGCCATGGACTCACCCAACGGCCATTACTCTTCCTCCCCTTCCAATTTCACCAAATTCAACTCC GCTCTAACCGCGGGTCTCCTCAACCCGATGTCTCCCCCGCCGGATCGTATGACCCGCTCTAGCCCCACCCTGTTCGAGATGATGGCAAACGAGCACGATT CTTCTTCTTCGCAGCAGCCGCCAAAGACACCGATTCCGACCACCATCACAGCCGTCGTTCCCAAAATCCCTCAACCGCAGGCGACGGTGGCGCAGCGGAT CGCGGAGATACTGGGCAGCCGGAGCCCCGGGAACCAGTTCAACGACTGTTCCTCCGGCGATGTGAAGCTGACTTTGAGCTCGAAAGATGGGATTAGCGTG TCGATTAGCGTCCACAGGCATATTCTGGTGGCTCACAGCCGGTTCTTCGCTGTCAAGCTTTCGGATCGTTGGGCTAAGCAGCAGGAAGCTTCTCCCTCGG GGCCGTACGTTGTTGAGATTGCTGACTGTGATGACATTGAGGTTTACATTGAGTCTCTAATGTTGATGTATTCCAAGGATTTGAGGAGGAGGCTCATGAA GGAAGAAGTCTGCAAAGTCCTCGACATCTTGAAGGTTTCAGCAGCGATAGGATTTGATGCAGGGGTGTTATCATGTTTGGAGTACTTGGAAGCTGCTCCA TGGGCAGAAGACGAGGAAGAGAAAGTGGCTTCACTACTATCGGAGCTGCGGCTCGAAGGAATCGGTGCAAGGGATGTTCTGAAGAGGGTCTCCGTTGAAG TTAACAATAATGGAGGAGTGGAAGAGAACGGTCTAGATAATAATGAGGAAGTGATTGTCAAGCTCCTGCACGTTGTTCTCGAAGGTAAGGACGAGAAGGC CAGGCGAGAAATGAAAGTGCTGGTTGCAAAGATGCTCAAGGAGAATGCTTCTTCTTCTTCTTCACAGCAGACCGATCTCAGGAAGGAGTCGTTGTATTCA GCTTGTGAAGGGTGTCTCCAACTGCTTCGTAACAAATTTCTCGAGGCAAGATCGGGGAATTTTAAGGATGTCGGGCAGATTGCTCGACAGGCTGACAACC TGCATTGGTTGTTGGACATAATGATCGACAGACAGATCGCCGAGGAGTTTTTGAAAACATGGGCATCGCAGACTGAACTCTCCGAAGCGCATTCCAAAGT TCCTGCAGTCCATAGGTACGAGGTGAGCAGGGTTACAGCAAGGCTGTTCGTTGGCGTCGGAAAAGGACAGATGTTGGCTTCGAAAGACGCGAGATTCATG CTTCTGCAGACATGGTTGGTGCCGTTCTACGACGATTTCGGATGGATGAGGAGGGCGCATAAGGGTCTGGATCGGCATTTGATCGAGGAAGGTTTAAGTA ACACTATTCTAACCTTGCCGCTAGCTTGGCAGCAGGACATTCTGCTTGCCTGGTTCAATCGGTTCCTTAACTCCGGTGAGGATTGCCCGAACATTCAGAG AGGGTTCGAGATTTGGTGGAGGCGGGCTTTCTGGAAGTGCGGTGGGGATCAGGTAAAGGCTCCGACTTGGAGAGTCGTTTCTGCAACTACTACTGCTGAG AAGTGA
AA sequence Show only first row Show all	>Lus10024658 pacid=23161557 polypeptide=Lus10024658 locus=Lus10024658.g ID=Lus10024658.BGIv1.0 annot-version=v1.0 MATTSIPTTTTTTTTPSPSPSPTTVAAAANTRAHLTVQAQPIKPKRRNYRETTISSSASAVEEESSAASLFEIRFDSSPAMDSPNGHYSSSPSNFTKFNS ALTAGLLNPMSPPPDRMTRSSPTLFEMMANEHDSSSSQQPPKTPIPTTITAVVPKIPQPQATVAQRIAEILGSRSPGNQFNDCSSGDVKLTLSSKDGISV SISVHRHILVAHSRFFAVKLSDRWAKQQEASPSGPYVVEIADCDDIEVYIESLMLMYSKDLRRRLMKEEVCKVLDILKVSAAIGFDAGVLSCLEYLEAAP WAEDEEEKVASLLSELRLEGIGARDVLKRVSVEVNNNGGVEENGLDNNEEVIVKLLHVVLEGKDEKARREMKVLVAKMLKENASSSSSQQTDLRKESLYS ACEGCLQLLRNKFLEARSGNFKDVGQIARQADNLHWLLDIMIDRQIAEEFLKTWASQTELSEAHSKVPAVHRYEVSRVTARLFVGVGKGQMLASKDARFM LLQTWLVPFYDDFGWMRRAHKGLDRHLIEEGLSNTILTLPLAWQQDILLAWFNRFLNSGEDCPNIQRGFEIWWRRAFWKCGGDQVKAPTWRVVSATTTAE K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	0	1
AT2G29180			unknown protein		Lus10040781 [exp]	1.4	0.9306
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	2.8	0.9450
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	4.5	0.9222
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	5.5	0.9305
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	7.3	0.9187
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	8.0	0.9169
AT1G26160			Metal-dependent phosphohydrola...		Lus10017897 [exp]	9.4	0.8510
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	9.9	0.9110
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	11.1	0.9225
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	11.2	0.9082

Compare expression of checked genes

Lus10024658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.