Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05170 224 / 5e-73 Phosphoglycerate mutase family protein (.1) AT1G08940 216 / 3e-70 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032291 [exp] 443 / 2e-160 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1) Lus10015164 [exp] 226 / 8e-74 AT3G05170 421 / 2e-149 Phosphoglycerate mutase family protein (.1) Lus10031518 [exp] 222 / 2e-72 AT3G05170 423 / 3e-150 Phosphoglycerate mutase family protein (.1) Lus10029974 [exp] 199 / 4e-63 AT3G05170 410 / 4e-145 Phosphoglycerate mutase family protein (.1) Lus10035350 [exp] 140 / 1e-40 AT3G05170 317 / 1e-108 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131200 [exp] 358 / 3e-125 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1) Potri.005G037900 [exp] 241 / 1e-79 AT3G05170 441 / 2e-157 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10024659 pacid=23161520 polypeptide=Lus10024659 locus=Lus10024659.g ID=Lus10024659.BGIv1.0 annot-version=v1.0 ATGATTGAGAAGAATGTTATTGGGGCGGAGGATGAAGATGATTGGAAAGTTTATTTCTATGTGTCTCCTTATAAGAGGACGAGGCAGACTCTGCAGCATT TGGGGAAGGCTTTCGAAAGGGGGAGGATTTCTGGGGTTAGGGAAGAGCCGAGATTGAGGGAACAGGACTTTGGGAATTTCCAGGACAGGGAGAGGATGAG AGTTGAGAAAGTTTTAAGAAATCTGTATGGTCGCTTCTTCTTCAGGTTTCCTAATGGAGAATCTGCGGCCGATGTCTATGACAGGATTACCGGGTTTAGG GAGACGTTGAAATCGGACATAGACGTGGGGAGGTTCCAGCCACCGGGGGAGAAGAGCGAGGACATAAACTTGGTTATAGTGTCACACGGCCTCACTCTGC GGGTGTTCCTGATGAGGTGGTACAAATGGACGGTGCAGCAATACGAGAGGCTCCACAACTTTGGCAATGCCGGCATGTTAGTCATGGAGAGAGGCTACGG TGGGAGGTACAGTCTATTGATGCATCACAGCGAGGAAGAACTGCGAGAGTTTGGACTCACAGAGGAGATGCTTAATGATCAGGAATGGCAAAAACATGCG AGGCCTGGGGAACTGAACTATGATTGCCCCACAGTGAACTCTTTCTTCCCTCATTTGGATGCTATTGCTGCAGAGCTTGACAACAAGCACTAA
AA sequence Show only first row Show all	>Lus10024659 pacid=23161520 polypeptide=Lus10024659 locus=Lus10024659.g ID=Lus10024659.BGIv1.0 annot-version=v1.0 MIEKNVIGAEDEDDWKVYFYVSPYKRTRQTLQHLGKAFERGRISGVREEPRLREQDFGNFQDRERMRVEKVLRNLYGRFFFRFPNGESAADVYDRITGFR ETLKSDIDVGRFQPPGEKSEDINLVIVSHGLTLRVFLMRWYKWTVQQYERLHNFGNAGMLVMERGYGGRYSLLMHHSEEELREFGLTEEMLNDQEWQKHA RPGELNYDCPTVNSFFPHLDAIAAELDNKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	0	1
AT2G36145			unknown protein		Lus10014224 [exp]	1.0	0.9417
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	1.4	0.9412
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	1.7	0.9360
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	2.8	0.9192
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	4.2	0.9112
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	6.3	0.9083
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	7.0	0.9094
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001177 [exp]	8.4	0.8536
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	8.7	0.9161
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10024339 [exp]	8.9	0.8992

Compare expression of checked genes

Lus10024659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.