Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23490 441 / 8e-155 Protein of unknown function (DUF604) (.1) AT4G11350 438 / 4e-154 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT5G41460 421 / 3e-147 Protein of unknown function (DUF604) (.1) AT1G07850 352 / 1e-119 Protein of unknown function (DUF604) (.1) AT1G01570 339 / 2e-115 Protein of unknown function (DUF604) (.1) AT4G00300 286 / 1e-91 fringe-related protein (.1.2) AT2G37730 234 / 4e-74 Protein of unknown function (DUF604) (.1) AT3G11420 196 / 1e-59 Protein of unknown function (DUF604) (.1) AT1G33250 188 / 2e-56 Protein of unknown function (DUF604) (.1) AT4G15240 181 / 4e-54 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032293 [exp] 529 / 0 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 489 / 8e-174 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10028769 [exp] 412 / 6e-148 AT4G23490 370 / 1e-127 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 365 / 4e-125 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 348 / 2e-118 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10007923 [exp] 332 / 3e-113 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10036142 [exp] 218 / 4e-71 AT1G07850 234 / 5e-74 Protein of unknown function (DUF604) (.1) Lus10010869 [exp] 194 / 3e-61 AT2G37730 305 / 2e-101 Protein of unknown function (DUF604) (.1) Lus10030153 [exp] 184 / 4e-57 AT2G37730 305 / 6e-101 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100700 [exp] 468 / 8e-166 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 465 / 2e-164 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 367 / 4e-126 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 341 / 5e-116 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 207 / 4e-64 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 205 / 4e-63 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 203 / 3e-62 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 203 / 3e-62 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 196 / 2e-59 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 193 / 2e-58 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10024662 pacid=23161591 polypeptide=Lus10024662 locus=Lus10024662.g ID=Lus10024662.BGIv1.0 annot-version=v1.0 ATGCAGGACCGGTGTATTCAGCGGTACCCGGGTTTGTACGGCTCCGACGACAGAATGCAGGCTTGTATGGCTGAGCTCGGCGTTCCCCTCACCAAAGAAA TTGGGTTCCACCAGTATGATGTCTACGGGAATCTATTCGGTCTCCTGGCGTCACATCCAGTGGCGCCGCTGGTCTCGCTGCACCACCTGGACGTGGTGGA GCCGATCTTCCCCAACGTGACACGAGTCGAGGCACTCCAGAGGCTAACAGTGCCGATGAAGCTGGACTCGGCGGGGATAATGCAGCAGTCGATATGCTAC GACAAGTCCAGGAGCTGGACAGTTTCGGTCTCGTGGGGGTTTGCTGTCCAGATATTCCGGGGTGTGCTCTCCCCCCGCGAGGTGGAAATGCCCTCTAGAA CGTTCTTGAACTGGTACCGGAGGGCTGACTACACCGCCTATGCTTTCAACACTCGTCCGGTGAGCAGGAACCCTTGCCAGAAGCCCTTTGTGTTCTACCT CTCGAAGGCAAGGTTTTTCGGGTCGTTGAACACGACAGTGAGCGAGTACCAGAGGCATCGCGCCGTCCAACCACAATGCCGGTGGAAGATGGCTGATCCT TCGGGTATCAACATGGCGGTCGTGTACAAGAAGCCTGACCCGACTCTTTGGAACAGGTCTCCAAGAAGGAACTGTTGCAGAGTGATGAATACAAAGAAGA AAGGATCAATAACCATTGATGTTGGAATGTGTAGAGATGGTGAAGTAAGTGAAGTATAG
AA sequence Show only first row Show all	>Lus10024662 pacid=23161591 polypeptide=Lus10024662 locus=Lus10024662.g ID=Lus10024662.BGIv1.0 annot-version=v1.0 MQDRCIQRYPGLYGSDDRMQACMAELGVPLTKEIGFHQYDVYGNLFGLLASHPVAPLVSLHHLDVVEPIFPNVTRVEALQRLTVPMKLDSAGIMQQSICY DKSRSWTVSVSWGFAVQIFRGVLSPREVEMPSRTFLNWYRRADYTAYAFNTRPVSRNPCQKPFVFYLSKARFFGSLNTTVSEYQRHRAVQPQCRWKMADP SGINMAVVYKKPDPTLWNRSPRRNCCRVMNTKKKGSITIDVGMCRDGEVSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	0	1
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	1.0	0.9205
AT3G55550			Concanavalin A-like lectin pro...		Lus10004710 [exp]	3.6	0.8767
AT3G06150			unknown protein		Lus10004424 [exp]	5.5	0.8989
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	6.0	0.9187
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	6.6	0.9049
					Lus10040587 [exp]	9.3	0.9074
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	12.2	0.8542
AT3G14240			Subtilase family protein (.1)		Lus10017301 [exp]	12.7	0.8651
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10022418 [exp]	13.5	0.8615
AT5G57460			unknown protein		Lus10000167 [exp]	13.6	0.8951

Compare expression of checked genes

Lus10024662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.