Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41460 287 / 2e-94 Protein of unknown function (DUF604) (.1) AT4G11350 280 / 3e-94 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 276 / 6e-90 Protein of unknown function (DUF604) (.1) AT1G01570 201 / 1e-61 Protein of unknown function (DUF604) (.1) AT4G00300 195 / 2e-57 fringe-related protein (.1.2) AT1G07850 172 / 6e-50 Protein of unknown function (DUF604) (.1) AT1G33250 161 / 7e-46 Protein of unknown function (DUF604) (.1) AT1G05280 156 / 1e-44 Protein of unknown function (DUF604) (.1) AT2G37730 157 / 2e-44 Protein of unknown function (DUF604) (.1) AT4G15240 146 / 1e-40 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032293 [exp] 485 / 5e-172 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 329 / 1e-110 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 209 / 5e-64 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 196 / 3e-59 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10008293 [exp] 173 / 2e-50 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 166 / 4e-48 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 164 / 1e-47 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10033262 [exp] 130 / 2e-35 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1) Lus10033260 [exp] 130 / 2e-35 AT1G33250 546 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131400 [exp] 315 / 2e-105 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 308 / 7e-103 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 229 / 2e-72 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 188 / 2e-56 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 168 / 2e-48 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 164 / 4e-47 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 160 / 4e-46 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 157 / 1e-44 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 154 / 2e-43 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 139 / 6e-38 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02434 [flax] [poplar] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Lus10024663 pacid=23161525 polypeptide=Lus10024663 locus=Lus10024663.g ID=Lus10024663.BGIv1.0 annot-version=v1.0 ATGAAAGGGAACCAGAAAGATCCGGAGAAGATCATCTGGGATCGGAACCCGACTTCCATCCCCCAAACCCGGATCCTCCCCAAGCTCATGGTCTGGCTCT TGCTCTTCGTCACCGCCTCCTACGTCTTCTACACTCTCAAGCTCCTCTCCACTTCCCAATCTTGTAACGACGCCGCCCATCCCTTCTCAACCGCAGCGCG TCTTGACGACGCGCCTCCGGGTGATAAGAACACGCTCCTCTCCCTTGCGGCACTCTCTACCAACGAATCCGACGTCGTTTCCCTGCCGCGGAGGGAGATC GAGGAGGAGAAGAAGCCGGAGCCGACGGATTTGAAACATGTGGTGTTCGGAATCGCGGCGTCGGCGAAGCTCTGGAAGCAGAGGAAGAACTACATCAAGA TCTGGTACAAGCCGGATAAGATGAGGGGCGTGGTCTGGATGGATGACAAGGTGTCCACGACTGCGGACCGTGACCTTCCGCCGGTGAGAATCTCCGGGGA TACGTCGAAGTTTGTGTACAAGAACAGGCAAGGACACAGGTCGGCGATCCGGATCTCGAGGATCGTTTCCGAGACGCTCCGCCTCGGGACGATGAACGAC GCGCGGTGGTTCGTGATGGGGGATGACGACACCGTTTTCATCACCGAGAATTTGGTCCGGATTCTCCAGAAGTACGACCACACACAGTATTACTACATCG GGAGCCTCTCCGAGTCGCACCTGCAGAACATTTACTTCTCATACGGAATGGCCTACGGCATCGTGCCGGTGGGGGCGGGTTATGCGTGA
AA sequence Show only first row Show all	>Lus10024663 pacid=23161525 polypeptide=Lus10024663 locus=Lus10024663.g ID=Lus10024663.BGIv1.0 annot-version=v1.0 MKGNQKDPEKIIWDRNPTSIPQTRILPKLMVWLLLFVTASYVFYTLKLLSTSQSCNDAAHPFSTAARLDDAPPGDKNTLLSLAALSTNESDVVSLPRREI EEEKKPEPTDLKHVVFGIAASAKLWKQRKNYIKIWYKPDKMRGVVWMDDKVSTTADRDLPPVRISGDTSKFVYKNRQGHRSAIRISRIVSETLRLGTMND ARWFVMGDDDTVFITENLVRILQKYDHTQYYYIGSLSESHLQNIYFSYGMAYGIVPVGAGYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	0	1
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	1.0	0.9205
AT4G23490			Protein of unknown function (D...		Lus10032293 [exp]	4.2	0.8993
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	4.2	0.9016
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	5.9	0.8903
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	8.2	0.8915
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10027288 [exp]	10.4	0.8552
AT5G52540			Protein of unknown function (D...		Lus10039273 [exp]	11.2	0.8691
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	11.5	0.8711
AT5G52540			Protein of unknown function (D...		Lus10027508 [exp]	11.7	0.8559
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	12.2	0.8686

Compare expression of checked genes

Lus10024663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.