Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41470 195 / 3e-61 Nuclear transport factor 2 (NTF2) family protein (.1) AT1G71480 96 / 2e-23 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032294 [exp] 463 / 6e-167 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10041048 [exp] 94 / 2e-22 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10003793 [exp] 43 / 7e-05 AT4G22370 86 / 4e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100500 [exp] 253 / 1e-83 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.003G131500 [exp] 247 / 2e-81 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.019G074800 [exp] 99 / 1e-24 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G100600 [exp] 84 / 2e-19 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.002G070800 [exp] 77 / 3e-16 AT5G41470 85 / 2e-19 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G013200 [exp] 69 / 2e-13 AT4G22370 114 / 6e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024664 pacid=23161616 polypeptide=Lus10024664 locus=Lus10024664.g ID=Lus10024664.BGIv1.0 annot-version=v1.0 ATGGCTACTATTGTTAATTTCTCAAATCTCCCTTATAATAAGCCCGCCTTCAAAGTGAGATTCAGCAGTAGAAGGCCATGCACCAGAAGGATCACTAATT CTCTTCTAAAAAGGGAAGCAGAGAGTTACAACGGAATCCTTAGGCAGCAAAGATTGCAGTTGGTCACAAAGAAAACGTCAACCAACTGCATGACGGTTGA TGGTGTGGACAACACATCAGCAGGGTCTGATCCAATCATCTCTCCGACAATCGTTGTCATCAGTTTGTATGAGTTTATCAATGCCAAGAAGTTGACGGAA ATTGGAGATCTCTTCTCTGAGGAATGTAGTTTGGAGGATTGCTCCTTCCCTTTCCCTATTCAAGGGAAAAAGGAAGCAAATATGTTCTTTCAACAGCTAA CGAGTAGTATGGGTAAGAATGTGAAGTTCATAATAGACCGAGTCTGCGAGAATCATCGTGAGCTCACAGTTGCAGTCAACTGGCACCTTGAGTGGAACAC CATTTTGATACCATTTACTAGAGGCTGCAGCTTCTACGAATGCACATGGGAACAAGAAGGTGGCCTAATTATAAAGAAAGCTGTTGTTGTAATTGAGTCA CCTATTAAACCAGGAGGCATTGTTATGGCACTGTTAAAGAATGTGACTGCCATATTCGACGAGTTTCCGAAAGCAGCTGAATGGTTTTTGCAGAGTCCTC ATGTAATCGTCCGCTTCTTGATGAAGACGTACACTACTTTTATGGCACCAGTTATCAAACCACTTGTAGCTGGCTACTTCAACATGGGGACTCTGATTGC TCGCCTCGCCACTCTTGCGATCCAGCTATTGGTTTACGTCTCAAAGAAGTACTTTCCAAAGGATTAG
AA sequence Show only first row Show all	>Lus10024664 pacid=23161616 polypeptide=Lus10024664 locus=Lus10024664.g ID=Lus10024664.BGIv1.0 annot-version=v1.0 MATIVNFSNLPYNKPAFKVRFSSRRPCTRRITNSLLKREAESYNGILRQQRLQLVTKKTSTNCMTVDGVDNTSAGSDPIISPTIVVISLYEFINAKKLTE IGDLFSEECSLEDCSFPFPIQGKKEANMFFQQLTSSMGKNVKFIIDRVCENHRELTVAVNWHLEWNTILIPFTRGCSFYECTWEQEGGLIIKKAVVVIES PIKPGGIVMALLKNVTAIFDEFPKAAEWFLQSPHVIVRFLMKTYTTFMAPVIKPLVAGYFNMGTLIARLATLAIQLLVYVSKKYFPKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	0	1
AT3G53270			Small nuclear RNA activating c...		Lus10024665 [exp]	2.4	0.9143
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10042852 [exp]	3.5	0.8943
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	4.7	0.9029
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	4.9	0.8856
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	5.2	0.8964
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	13.0	0.8728
AT2G45990			unknown protein		Lus10036369 [exp]	14.5	0.8817
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	18.3	0.8885
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	19.8	0.8705
					Lus10007298 [exp]	20.5	0.8612

Compare expression of checked genes

Lus10024664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.