Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53270 87 / 5e-21 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032295 [exp] 153 / 2e-44 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10008478 [exp] 139 / 1e-40 AT3G53270 273 / 4e-91 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Lus10001478 [exp] 136 / 5e-39 AT3G53270 294 / 5e-99 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065800 [exp] 102 / 1e-26 AT3G53270 292 / 5e-99 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Potri.004G126760 [exp] 59 / 3e-11 AT3G53270 157 / 2e-48 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Potri.004G126720 [exp] 56 / 4e-10 AT3G53270 174 / 3e-55 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09808 [flax] [poplar] SNAPc_SNAP43 Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Representative CDS sequence Show only first row Show all	>Lus10024665 pacid=23161577 polypeptide=Lus10024665 locus=Lus10024665.g ID=Lus10024665.BGIv1.0 annot-version=v1.0 ATGTCCAGCAAGGAACAGTCAACAAGATTTTCAGACCTGAAGAAGATATGGCATTCAAGGAAGTTTTCTTACATTTACGATGCCAACCCTGCTGCAAATT TCGCTTTCTTTATGCAGTCTCTACATGCTCATACAATTGGCCATATGTATGACACGGCTTCCTTATCAAGAGGATTAGTGGGATTGTATTGCTTGTTAAG GTTGGAGGATACCGGAGTTGAGCACTTCCTCCACCTGGACATGGCAAAAGAGTTGGATGTAGACAAGTTGAAGAAAGCATCCACAGAATATGCGGAGTTT AAGAAACATGCAATGGAAGAGGCCAGCAAGGTAGTTAATGTTGAAGATGTTGAGCATCTCGCGAATGACGAGGAACTGATTGTTGACGAAGTGGAGAAAA TCACAGAGTGTTGGAAAGTCCAGAAGGATCTGTACTACCAACAAGATGATGATGATAATGACAATGAAGATAACGACAACGACAATGAAGATGACAACGA CGAATATGGTCGTTAG
AA sequence Show only first row Show all	>Lus10024665 pacid=23161577 polypeptide=Lus10024665 locus=Lus10024665.g ID=Lus10024665.BGIv1.0 annot-version=v1.0 MSSKEQSTRFSDLKKIWHSRKFSYIYDANPAANFAFFMQSLHAHTIGHMYDTASLSRGLVGLYCLLRLEDTGVEHFLHLDMAKELDVDKLKKASTEYAEF KKHAMEEASKVVNVEDVEHLANDEELIVDEVEKITECWKVQKDLYYQQDDDDNDNEDNDNDNEDDNDEYGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53270			Small nuclear RNA activating c...		Lus10024665 [exp]	0	1
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	2.4	0.9143
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	5.2	0.9286
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	9.3	0.9177
AT4G10970			unknown protein		Lus10023075 [exp]	9.6	0.9204
					Lus10006087 [exp]	11.1	0.9164
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	12.1	0.9138
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	13.8	0.9144
					Lus10040954 [exp]	28.3	0.8984
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	30.2	0.8979
AT5G36930			Disease resistance protein (TI...		Lus10007828 [exp]	30.8	0.8936

Compare expression of checked genes

Lus10024665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.