Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18950 263 / 4e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 194 / 3e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 187 / 1e-51 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 185 / 1e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 184 / 1e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62670 182 / 3e-50 RPF2 rna processing factor 2 (.1) AT1G63400 179 / 2e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 178 / 2e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 179 / 3e-49 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G65560 181 / 4e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027916 [exp] 186 / 5e-51 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 179 / 2e-48 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 179 / 3e-48 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 176 / 4e-48 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012068 [exp] 177 / 2e-47 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034616 [exp] 174 / 5e-47 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 175 / 9e-47 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 174 / 1e-46 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 173 / 3e-46 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045000 [exp] 198 / 4e-56 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 194 / 7e-55 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 190 / 1e-54 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 191 / 8e-54 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 187 / 3e-52 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 186 / 5e-52 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 185 / 1e-51 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 187 / 2e-51 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 185 / 2e-51 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 184 / 4e-51 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024666 pacid=23161551 polypeptide=Lus10024666 locus=Lus10024666.g ID=Lus10024666.BGIv1.0 annot-version=v1.0 ATGGCAAGAGCTTCCTTGTCATTTGCAACATTTATCCGCCAATTCCGCTGTGGCACTCAAACCCAGATGCGAAGGTTTTCAGTAGAATGTGATGGAAGTG AATCTACTTGCGGTTCGGCTGATACAAATGGAAGTCCAGATTTAGAGGAAATAGCCAAAGACGTTTCTAAGATCATTAGGACGGAGACCAAATGGGAACA GACTCTCCGCTCTGATTTCCCTTCTTTCAATTTCGCCGATTCTGAGTTCTTTCAGAAGTTTCTGAAGCACCAAACCAATGTGCTCCTTTCATTCAAGTTC TTTCACTGGCTGCGGTCGGAGCTAGGTTTCGTACCCTCGATTAGGACATGGAATTCGGTCTTATCACGTTGCCTCAAGGCTGAAAGGACTGATCTGGTAT GGAGATTGTATCAGGATATGATGGATACAGGTGTTGTTGCTGATTCGGACACGGTTTCTTGTCTCATTAAAGCTTTTGCCAAGGACGGGGAAGTAGGAAA AGGGTACGAACTACTGAAACAAGTTTCGAGTAATGGTTTATGTCCCGGGAATGCATCTTTCAATAAGCTGATATCTGAATTTTCCAAGAGAGGGGATAAC AACATGGTTTCCGAACTTCTTCACACGATGATTGCAAGGAACATGAACCCGGATGTCCAAACGTATCAAGAAGTTGTCAACGGACTATGCAAGAATCAAA TGTCGCTTGAGGCTTTGAAAGTTTTTAACGATCTTAAGGACAGAGGGTATGCAGTTCACGGAGGTTTGTACAAAACCGTAATCCAGGGTCTTTGCCATAC GAACTACGTCAGTTACGCTAGGCAGCTTTGGTTGGAGATGATCCGTAAAGGTATTGCTCCGAATCAGGATACATATAATGCACTGATCCATGGCTATTTT AAGCTTGGCAATGTCGAAGAAGCTAATAAGCTCTACGAAGAGATGGGTAAAAAAACCAGGGTTAGTTGTAACATCATGATTAACGGGTTGTGCATGAACG GAAAAATCGATGAAGCTTTGAACTTTTTCAGGAGCATGCCGAAAAAGGGAATTTCTCCGGATCTAATCTCGTTCAACGCACTAATTATTGCCTTTTGCAA AGAAGGGAGGACGGATGAGAGCAGAAAGCTGATTGAAGAACTGTTGGCTCTTGGTCTGCAACCGTGGGCTTCAACGTACGGTCCCCTAGTCTGGAAGTTG TGCCTACTGGGAGACATTGAAGAAGCGATGAAGGTCTGGAACGAGATGCAGAGCAAGGGCTTAAAACCAGCAGCGTGGACTTTTCATCACTATGTAGTGG GGCTGTGCAAGAAAGGGTATGCCGCAGAAGCTGTGAAATGGCTGTTGGTGATGCTGGAGAATAAGGTGAAACCTCGGAAGATTGTTTTCGATAGAGTTAT TAAATGTCTGCTGCAAAATGATAGGGAGGAGGATTCGTTGCTTGTATTAAACTACATGGTTAAATTTGGTTACTCTACCAGATACATAGAGCCTTTTCTG ATGCGTGAACTTCCTGAGAGCATTCCACCTCTTGTTGACAATATGCCAACCTGA
AA sequence Show only first row Show all	>Lus10024666 pacid=23161551 polypeptide=Lus10024666 locus=Lus10024666.g ID=Lus10024666.BGIv1.0 annot-version=v1.0 MARASLSFATFIRQFRCGTQTQMRRFSVECDGSESTCGSADTNGSPDLEEIAKDVSKIIRTETKWEQTLRSDFPSFNFADSEFFQKFLKHQTNVLLSFKF FHWLRSELGFVPSIRTWNSVLSRCLKAERTDLVWRLYQDMMDTGVVADSDTVSCLIKAFAKDGEVGKGYELLKQVSSNGLCPGNASFNKLISEFSKRGDN NMVSELLHTMIARNMNPDVQTYQEVVNGLCKNQMSLEALKVFNDLKDRGYAVHGGLYKTVIQGLCHTNYVSYARQLWLEMIRKGIAPNQDTYNALIHGYF KLGNVEEANKLYEEMGKKTRVSCNIMINGLCMNGKIDEALNFFRSMPKKGISPDLISFNALIIAFCKEGRTDESRKLIEELLALGLQPWASTYGPLVWKL CLLGDIEEAMKVWNEMQSKGLKPAAWTFHHYVVGLCKKGYAAEAVKWLLVMLENKVKPRKIVFDRVIKCLLQNDREEDSLLVLNYMVKFGYSTRYIEPFL MRELPESIPPLVDNMPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	0	1
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	1.4	0.8889
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	3.5	0.8422
AT1G12530			unknown protein		Lus10007047 [exp]	5.5	0.8094
AT1G09870			histidine acid phosphatase fam...		Lus10040951 [exp]	6.2	0.8303
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	7.7	0.8224
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	9.2	0.7709
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	11.1	0.8237
AT4G38500			Protein of unknown function (D...		Lus10025082 [exp]	18.9	0.7419
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	19.2	0.8001
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	21.6	0.7589

Compare expression of checked genes

Lus10024666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.