Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01370 647 / 0 ATMPK4 MAP kinase 4 (.1) AT1G01560 621 / 0 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 614 / 0 ATMPK5 MAP kinase 5 (.1) AT2G46070 603 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G07880 570 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT2G43790 543 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 521 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT3G59790 492 / 9e-175 ATMPK10 MAP kinase 10 (.1) AT2G18170 426 / 6e-149 ATMPK7 MAP kinase 7 (.1) AT1G10210 419 / 2e-146 ATMPK1 mitogen-activated protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017518 [exp] 671 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 667 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 663 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 654 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10032295 [exp] 621 / 0 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10008339 [exp] 574 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 573 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 520 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 518 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131800 [exp] 701 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 677 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 654 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 652 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 575 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 565 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 527 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 523 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.005G231100 [exp] 431 / 7e-151 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 427 / 3e-149 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024668 pacid=23161598 polypeptide=Lus10024668 locus=Lus10024668.g ID=Lus10024668.BGIv1.0 annot-version=v1.0 ATGGTGTCAAGTGGAAGCAAAGAGTCGTCGAGCTCCGCTCCTGTAACGGCGGCCACCAAGACAGCGGGAGGAGGAGGCGGTGATAAAATAAAGGGTGTGT TGACTCACGGCGGCCGTTATGTTCAGTACAATGTTCATGGCAACTTGTTCGAAGTTTCCTCTAAATACGTTCCTCCTATTCGACCCATTGGCCGCGGCGC TTATGGCATCGTCTGTGCTGCGGTGAATTCAGACACACGGGAGGAAGTTGCGATCAAAAAGATCGGAAATGCGTTCGACAACAGGGTCGATGCGAAGAGG ACTTTGCGAGAGATCAAGCTGCTACGCCACATGGACCATGAAAATGTAATTGCTATCAGGGACATTATCCGACCACCGAAGAAAGAGGCATTCAATGATG TTTATATAGTCTATGAATTGATGGATACTGATCTGCATCAGATCATCCGTTCTGACCAGTTTTTGACTGATGACCACTGTCAGTACTTCTTGTATCAACT GCTACGAGGATTGAAGTACGTGCATTCAGCGAACGTCCTGCACCGAGATCTTAAGCCAAGCAATCTGCTTCTGAATGCAAACTGCGACCTTAAAATTGGG GACTTTGGTCTGGCGAGAACAACTTCTGAGACGGATTTCATGACGGAGTACGTTGTCACTCGTTGGTACCGAGCACCAGAACTGCTCTTAAATTGTTCAG AGTACACTGCTGCCATAGATATTTGGTCTGTTGGTTGCATCCTTGGTGAAGTTATGACCAGAGAACCCTTGTTTCCTGGAAAGGATTATGTCCATCAACT CAGGCTCATTACAGAGTTGATAGGTTCACCAGATGATGCTAGCCTCGGTTTCCTAAGAAGCGACAACGCAAGAAGATACGTTAGGCAGCTACCACAGTTC AGAAAACAGAACTTCTCCACGAGGTTCCCTACTATGTCGCCTGGAGCAGTCGATCTGCTCGAGAAGATGCTCGTATTCGATCCCAACAAGCGAATTACAG TTGATGATGCGCTTTGCCACCCGTACTTGTCAGTCCTTCACGACATGAACGACGAACCAGTCTCTCCCGCACCTTTCCACTTTGATTTCGAGCACCCTTC TTGCACAGAGGACCATATCAAGGAGCTGATATGGAGAGAGTCGGTGAAATTCAACCCGGATCAGTAA
AA sequence Show only first row Show all	>Lus10024668 pacid=23161598 polypeptide=Lus10024668 locus=Lus10024668.g ID=Lus10024668.BGIv1.0 annot-version=v1.0 MVSSGSKESSSSAPVTAATKTAGGGGGDKIKGVLTHGGRYVQYNVHGNLFEVSSKYVPPIRPIGRGAYGIVCAAVNSDTREEVAIKKIGNAFDNRVDAKR TLREIKLLRHMDHENVIAIRDIIRPPKKEAFNDVYIVYELMDTDLHQIIRSDQFLTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIG DFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEVMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYVRQLPQF RKQNFSTRFPTMSPGAVDLLEKMLVFDPNKRITVDDALCHPYLSVLHDMNDEPVSPAPFHFDFEHPSCTEDHIKELIWRESVKFNPDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10024668 [exp]	0	1
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10022212 [exp]	1.0	0.8120
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Lus10037350 [exp]	3.5	0.7631
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024753 [exp]	3.9	0.7766
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	5.3	0.7791
AT5G61670			unknown protein		Lus10016713 [exp]	12.2	0.7840
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	13.9	0.7750
AT4G27020			unknown protein		Lus10032644 [exp]	15.9	0.7648
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	16.5	0.7468
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	32.2	0.7716
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	32.9	0.7739

Compare expression of checked genes

Lus10024668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.