Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63950 47 / 2e-07 Heavy metal transport/detoxification superfamily protein (.1) AT1G01490 46 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 38 / 0.0006 Copper transport protein family (.1) AT5G27690 39 / 0.0008 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040691 [exp] 91 / 1e-23 AT2G29640 75 / 3e-16 JOSEPHIN-like protein (.1) Lus10027523 [exp] 57 / 5e-11 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 58 / 1e-10 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 53 / 2e-09 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 54 / 5e-09 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10024672 [exp] 47 / 3e-07 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027522 [exp] 45 / 2e-06 AT1G01490 83 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10017520 [exp] 43 / 7e-06 AT1G01490 52 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 44 / 1e-05 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073000 [exp] 54 / 4e-10 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 53 / 9e-10 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 52 / 4e-09 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 48 / 7e-08 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 48 / 1e-07 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 46 / 4e-07 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 45 / 2e-06 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 43 / 1e-05 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147300 [exp] 42 / 1e-05 AT1G01490 87 / 2e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147200 [exp] 40 / 7e-05 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024670 pacid=23161648 polypeptide=Lus10024670 locus=Lus10024670.g ID=Lus10024670.BGIv1.0 annot-version=v1.0 ATGATCCTCAAGGTGGAGATCCGCGACGAGAAGCACAAGCTCAAGGTGTTGAAGGCCATCGCGATCCCAGGGATCGTGGGCTCGAACATCGACATGAAGG AGCAGAAGCTGACCGTATTCGGAGATGTCGACCCGGGGAAAGTGTGGAGGACTCTCAAATGGGTGTGTTTCAGTGCCATCATATCGGTGGAGATGGATTT CGAGGAGAGGGAACAGGCGGACGAGGAGGCGAGAGTGAAGGAACAAGAAGAGAAGATAAGAGATGAGGTCATGCAGGAAAAATATGGGATGGTTGGTGGT ATGAATTATTATCATCGGCATCAAATACCCTCGTCGGACTATGTCCAACATTTTCGATACCCCTATCCCGAACCTGTGGTCATAGTAGACGATAGCCCTG GCTGCGTCGTTATGTGA
AA sequence Show only first row Show all	>Lus10024670 pacid=23161648 polypeptide=Lus10024670 locus=Lus10024670.g ID=Lus10024670.BGIv1.0 annot-version=v1.0 MILKVEIRDEKHKLKVLKAIAIPGIVGSNIDMKEQKLTVFGDVDPGKVWRTLKWVCFSAIISVEMDFEEREQADEEARVKEQEEKIRDEVMQEKYGMVGG MNYYHRHQIPSSDYVQHFRYPYPEPVVIVDDSPGCVVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10024670 [exp]	0	1
					Lus10029617 [exp]	1.0	0.9564
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	6.5	0.9101
					Lus10008385 [exp]	13.7	0.9126
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10025744 [exp]	16.3	0.8780
AT5G61340			unknown protein		Lus10003483 [exp]	16.7	0.8699
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	19.1	0.8728
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	19.7	0.9070
AT3G21690			MATE efflux family protein (.1...		Lus10020049 [exp]	20.1	0.8475
					Lus10009393 [exp]	22.6	0.9067
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	23.9	0.8565

Compare expression of checked genes

Lus10024670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.