Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G11480 272 / 4e-88 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 271 / 2e-87 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G36470 266 / 5e-86 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 262 / 2e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 262 / 2e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 262 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 259 / 7e-83 JMT jasmonic acid carboxyl methyltransferase (.1) AT2G14060 243 / 4e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 182 / 9e-54 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041380 [exp] 431 / 2e-150 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 434 / 7e-148 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 417 / 8e-145 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 417 / 9e-145 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 405 / 3e-139 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 251 / 4e-80 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 207 / 4e-63 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10043177 [exp] 178 / 1e-51 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10032299 [exp] 162 / 3e-49 AT3G11480 87 / 1e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 407 / 3e-141 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 298 / 1e-98 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 292 / 3e-96 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 280 / 2e-91 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G021400 [exp] 272 / 3e-88 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 258 / 8e-83 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022402 [exp] 252 / 2e-80 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 248 / 5e-79 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.012G049900 [exp] 204 / 8e-62 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 192 / 4e-57 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024671 pacid=23161560 polypeptide=Lus10024671 locus=Lus10024671.g ID=Lus10024671.BGIv1.0 annot-version=v1.0 ATGCAGAAGCAGAACAGACAGTTTCATCACATTATCCCTCCCAGTTGCGCAATTCCAAAATCTCCACAACTGATAGAACAAAAGGCAGAGAGATCGACAT GTCGAGAAACAGAGGCGAAAAGCAGAGACCAAGGTAAAGAACCAGATCTCCAGATCATGAAGCTAGATGAGGTGCTACATATGAATGGCGGGACTGGAGA GACCAGTTACGCTGTCAACTCCCTACTTCAGCGAAATGCGATATCGATGACTAAGTCAATAGCAGATGAAGCGATTACTGGACTAGTCCGCAGCTCAAAC TATCCCCCGAAGGGAAGTCTAGCCATTGCGGATTTGGGATGCGGTTCAGGACCCAACACATTTCTAGCCGTTTCAGAACTTGTCAAATCCTTCGTCGGGA TTTCCAAGAACCTAGGCAAGGAACCTCCAAAGGAGTTTCATATCCTTCTGAACGACCTTCCAGGAAACGACTTCAACAACATCTTCAGCTCTCTGCATCA ATTCAAGAAACAAATGATGATGATGGATGAATCGTCTACAATGTTCTTCAACGGGGTACCGGGTTCTTTCTATGGAAGATTGTTCCCATCTGAGAGTGTT CACTTCGTTCACTCTTCCTACAGCCTGCATTGGCTGTCTCAGGTTCCTGACAGGCTAGAGGAAAACGGAGGGAATGTTACGATAAATAGTCGTAGCCCTC CTAGTGTTTTTGAAGCATATTACGGGCAGTTCAGGAAAGATTTTTCGAGTTTTTTGAGGTGTCGAGCTCCGGAGATGGTGAAAGGTGGACGGATGGTTTT GACATTGCTGGGGAGGAGAAATGAAGACATTGGAGGCAGAGAATGTTACTACATTTGGGAGCTCATCTCAATTGTCCTAAACCAAATGGCTCAACAGGGA AGTATAAGCAAGGAGAGGTTGAAGTCGTTCAATGTCCCACTGTACATGCCATCTCCAACTGAGGTGGAAGTGGAAGTGAAAGAAGAGGGATCTTTCGCCA TAGATAAGCTACAGGTTACAGAAGTGAGTTGGTACCAAGGGGATCAAGTTGAATCTGGTGGCTACCATGTGGCCAACTGCATGAGGGCGGTGGCCGAACC GTTGTTGACCTACCACTTTGGTTCTGACGATTGCGAATTTATCGACCGGGTCTTTCAGAAGTACAGAGGAATTGTGTCGGAGCGGATGGCGGCTGGCAAA ACTAGCTGTTTCAATCTCACCATCTCACTCGTTAAGTACTGA
AA sequence Show only first row Show all	>Lus10024671 pacid=23161560 polypeptide=Lus10024671 locus=Lus10024671.g ID=Lus10024671.BGIv1.0 annot-version=v1.0 MQKQNRQFHHIIPPSCAIPKSPQLIEQKAERSTCRETEAKSRDQGKEPDLQIMKLDEVLHMNGGTGETSYAVNSLLQRNAISMTKSIADEAITGLVRSSN YPPKGSLAIADLGCGSGPNTFLAVSELVKSFVGISKNLGKEPPKEFHILLNDLPGNDFNNIFSSLHQFKKQMMMMDESSTMFFNGVPGSFYGRLFPSESV HFVHSSYSLHWLSQVPDRLEENGGNVTINSRSPPSVFEAYYGQFRKDFSSFLRCRAPEMVKGGRMVLTLLGRRNEDIGGRECYYIWELISIVLNQMAQQG SISKERLKSFNVPLYMPSPTEVEVEVKEEGSFAIDKLQVTEVSWYQGDQVESGGYHVANCMRAVAEPLLTYHFGSDDCEFIDRVFQKYRGIVSERMAAGK TSCFNLTISLVKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	0	1
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10008041 [exp]	5.6	0.7569
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10029410 [exp]	6.3	0.7363
					Lus10019938 [exp]	7.5	0.7217
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10001226 [exp]	7.5	0.7543
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	19.4	0.6716
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	26.5	0.7284
AT2G19050			GDSL-like Lipase/Acylhydrolase...		Lus10002771 [exp]	26.9	0.6924
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026073 [exp]	36.1	0.6545
					Lus10016514 [exp]	40.3	0.6830
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	46.0	0.7337

Compare expression of checked genes

Lus10024671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.