Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63980 321 / 3e-107 D111/G-patch domain-containing protein (.1.2) AT3G52350 44 / 5e-05 D111/G-patch domain-containing protein (.1) AT5G08535 40 / 0.0006 D111/G-patch domain-containing protein (.1.2) AT1G30480 42 / 0.0007 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032300 [exp] 462 / 1e-163 AT1G63980 227 / 2e-71 D111/G-patch domain-containing protein (.1.2) Lus10017524 [exp] 449 / 5e-157 AT1G63980 361 / 5e-123 D111/G-patch domain-containing protein (.1.2) Lus10037485 [exp] 45 / 7e-05 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10015703 [exp] 45 / 7e-05 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10023355 [exp] 43 / 0.0003 AT1G30480 470 / 3e-166 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Lus10038451 [exp] 43 / 0.0003 AT1G30480 455 / 6e-160 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132600 [exp] 416 / 6e-144 AT1G63980 328 / 9e-110 D111/G-patch domain-containing protein (.1.2) Potri.009G064600 [exp] 45 / 5e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.001G269900 [exp] 44 / 0.0002 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.001G372600 [exp] 42 / 0.0004 AT1G30480 327 / 5e-110 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.011G098100 [exp] 42 / 0.0004 AT1G30480 348 / 1e-118 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10024674 pacid=23161663 polypeptide=Lus10024674 locus=Lus10024674.g ID=Lus10024674.BGIv1.0 annot-version=v1.0 ATGGCGGCACCGGAATCTCCTGTCTGCTACGTCGGCGTAGCCAGAAAGTCCGCCGCTTTCCGCCTCATGAAACAAATGGGATGGGAAGAAGGAGAAGGGT TGGGGAAAGATAAGCAAGGGATCAAGGGACACGTCAGAGTCAAGAACAAGCAGGATACTTCTGGTGTCGGAGTGGAGAAGCCGAATGCTTGGGCGTTTGA TACTACCCAATTCGATAGTATCTTGAAGAGATTGAAAGTGCAAGCAGTGCAGAACACTGAGGTTCAGAGCACTGATGAAGCTATCGAGGAAGATACTGAA CTAGATAAACAGGATGTGAAGGTTGTGTCTAAGGATGTTCAAGTACCGGTTGCCAAGGTTACTCGGCCGCAAGGAAGATATCAGAAAAGGGAGAGGGGGA AGCGTGTCAATGGTTATTCTATGAAGGACTTGGAAGGGATTCTTGTTAGAAAGACCGAGGAGCTACCTCAGGTTGATCATAATGAATTGGCCTCTCCTGA AGAAGAAGAAGAAGAAGAAGAAGAAGCAGCCCAAGTTTATAACCCGTCAGGAAACAAGGTTGAAGAGCTTTCTCCGGATTGGTGGGGCCACAAATTCGGA TTCGTCTCTGGTGGTCTACTTGGAGCTCGTTCGACCAAGAAGAAATCAACGAAAAAGGGAGATGCTCAAAATCCTAAAGAGAGGACTGCCTTTTTTGAAC AAGATCAAGAGGATCTTTACAATCTTGTCCAAGATAATGCCACATCCGGCAAGCAAGGACTAGGTATTAAGAGTCAGCCCAAGAAAATCGGAGGTGCTCG TTTTGAGGGGAAAAAGAAATCATTTTCTGACAGTGAGAACGATGATTCTGCTGAGGAGGATTCCGCATCAGAGCAGCAGTCTAATGTTGCTGAAGAAATG GAGACCATCGATGATAACGAATCTACTAAACCAGATCAGTCCTCCAGGAAAAGGAAATATGATGACGATCAATCAGGTGAAGATGGGGAAGTGCAAAAGG TTAATCTGAAGAAGCTGTCTAAAAGGCTTCTGCAGAAGGCGTCTGGAGAATCTCTCAAGCTGAAAAAGCTGAAGGTTCTTATCGAGGAACACTCAGCCTC TGTTTTCTCAAACTTCTCTTCGAAAAGAGATGCTCTTGCTTACTTGAAGCAAAAGTTGGAAGGCAGTGAGAAATTTGCAGTGGATGGTAAGAAAGTAAGC CTTGCTTCCAGAAGAAGCTGA
AA sequence Show only first row Show all	>Lus10024674 pacid=23161663 polypeptide=Lus10024674 locus=Lus10024674.g ID=Lus10024674.BGIv1.0 annot-version=v1.0 MAAPESPVCYVGVARKSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRVKNKQDTSGVGVEKPNAWAFDTTQFDSILKRLKVQAVQNTEVQSTDEAIEEDTE LDKQDVKVVSKDVQVPVAKVTRPQGRYQKRERGKRVNGYSMKDLEGILVRKTEELPQVDHNELASPEEEEEEEEEAAQVYNPSGNKVEELSPDWWGHKFG FVSGGLLGARSTKKKSTKKGDAQNPKERTAFFEQDQEDLYNLVQDNATSGKQGLGIKSQPKKIGGARFEGKKKSFSDSENDDSAEEDSASEQQSNVAEEM ETIDDNESTKPDQSSRKRKYDDDQSGEDGEVQKVNLKKLSKRLLQKASGESLKLKKLKVLIEEHSASVFSNFSSKRDALAYLKQKLEGSEKFAVDGKKVS LASRRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63980			D111/G-patch domain-containing...		Lus10024674 [exp]	0	1
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Lus10033681 [exp]	7.7	0.9048
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	9.8	0.9264
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	9.9	0.9143
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	13.9	0.9201
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	23.0	0.9198
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	23.0	0.9161
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	23.8	0.9162
AT1G65900			unknown protein		Lus10007381 [exp]	24.0	0.9147
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10037964 [exp]	24.2	0.9028
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	33.2	0.9136

Compare expression of checked genes

Lus10024674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.