Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63990 287 / 6e-97 SPO11-2 sporulation 11-2 (.1) AT5G02820 121 / 3e-32 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT3G13170 97 / 1e-23 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032302 [exp] 266 / 6e-91 AT1G63990 253 / 8e-84 sporulation 11-2 (.1) Lus10003996 [exp] 122 / 1e-32 AT5G02820 720 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10004416 [exp] 90 / 5e-21 AT3G13170 479 / 2e-170 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10015052 [exp] 68 / 2e-13 AT5G02820 495 / 2e-176 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10016612 [exp] 67 / 1e-12 AT3G13170 423 / 7e-145 Spo11/DNA topoisomerase VI, subunit A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099100 [exp] 308 / 2e-105 AT1G63990 603 / 0.0 sporulation 11-2 (.1) Potri.006G132600 [exp] 122 / 2e-32 AT5G02820 700 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G366700 [exp] 102 / 2e-25 AT3G13170 499 / 2e-178 Spo11/DNA topoisomerase VI, subunit A protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024675 pacid=23161593 polypeptide=Lus10024675 locus=Lus10024675.g ID=Lus10024675.BGIv1.0 annot-version=v1.0 ATGGAGCACGGAATGGACGAAGAACTCAACCTCTGTAAATCATCAATGGCGTTCTTCTCCGTTCAACAGCTCTGCTATGCCGATATCCTACTAGCTAATG AGGTGAAACATTCATCGATAACTGACTCTGTGTTCACCAAAAGAGTGACTCTCTTTGTTGGAAATGTGCAGCATGCGATTTTCCAAAGATTAGCCGAGGA TCGTATATTCAATCACATTCCAAGCATTCTCATTACAGCAAAAGGGTATCCGGATATGGCCACTAGATTTCTTCTTCACCGCCTGAGCAGGGCTTTTCCT CACATGCCCATTTTTGGTCTGGTTGATTGGAATCCAGCCGGATTAGCGATACTAAGCACATTCAAGCACGGAAGCATAGGGATGGGTCTGGAAGCTTACA GATATGCATGCAATGTGAGATGGTTAGGTGTTCGTGGAGATGATCTACAACTCATACCTGAAGAATCTCTCGTGCCATTGAAGCCACGGGACGTCCAGAT AGCTAAAAGCTTGATGTCTTCAAAAATAATGCAGGAAAAATACAAAGAAGAATTGGAGCTAATGGTTCAGACGGGGAAGAGGGCAGAAATTGAAGCACTG TTCTATCATGGCTATGACTTCCTCGGAAAGTACATCGCCAAGAAGATTGTACAAGCCAACTACATCTAG
AA sequence Show only first row Show all	>Lus10024675 pacid=23161593 polypeptide=Lus10024675 locus=Lus10024675.g ID=Lus10024675.BGIv1.0 annot-version=v1.0 MEHGMDEELNLCKSSMAFFSVQQLCYADILLANEVKHSSITDSVFTKRVTLFVGNVQHAIFQRLAEDRIFNHIPSILITAKGYPDMATRFLLHRLSRAFP HMPIFGLVDWNPAGLAILSTFKHGSIGMGLEAYRYACNVRWLGVRGDDLQLIPEESLVPLKPRDVQIAKSLMSSKIMQEKYKEELELMVQTGKRAEIEAL FYHGYDFLGKYIAKKIVQANYI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	2.6	0.9474
					Lus10024618 [exp]	4.2	0.9320
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	5.5	0.9254
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10030442 [exp]	5.5	0.8703
					Lus10010697 [exp]	6.3	0.9254
AT5G20610			unknown protein		Lus10025003 [exp]	7.1	0.9254
					Lus10025954 [exp]	7.7	0.8072
					Lus10008327 [exp]	7.7	0.9254
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	8.4	0.9254
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	8.9	0.9038

Compare expression of checked genes

Lus10024675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.