Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52830 150 / 2e-43 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G01250 146 / 3e-42 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT4G23550 140 / 5e-40 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT2G34830 126 / 1e-33 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 126 / 2e-33 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT5G45050 120 / 2e-30 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G29280 112 / 9e-30 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 107 / 2e-27 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G23320 100 / 1e-24 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G24240 99 / 9e-24 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032303 [exp] 395 / 1e-139 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10039295 [exp] 150 / 2e-43 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 149 / 3e-42 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10007907 [exp] 139 / 1e-38 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 130 / 1e-36 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10038426 [exp] 130 / 4e-36 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10018815 [exp] 114 / 9e-29 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10007305 [exp] 105 / 2e-27 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 105 / 7e-27 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099001 [exp] 164 / 5e-49 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1) Potri.003G132700 [exp] 161 / 1e-47 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.017G149000 [exp] 151 / 6e-43 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.004G072000 [exp] 151 / 9e-43 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.002G164400 [exp] 137 / 3e-38 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.014G090300 [exp] 137 / 4e-38 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.011G157100 [exp] 135 / 8e-37 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 133 / 7e-36 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 108 / 6e-28 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.004G060900 [exp] 106 / 2e-27 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10024676 pacid=23161629 polypeptide=Lus10024676 locus=Lus10024676.g ID=Lus10024676.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGGATCTTGACGCCGTTGTCAGAGGCTGTAACAGCAACCCTTTAATTCCAAATCCTTCTTTTTCTCCGATGGAGTTAGAGTTTCCAGTTA CTAGCACTGGGTTCTGCTTTGAGGAGTATGATGATCAGTTCTTTGATGCTGATTTGGATGGGTTGCTTGAAGGCCTTTACAAGCCCTTTTGTAATTACCA ACAGCCGTCAAGTACTCTTCTCACCGCAGATCCGCCGCCGCCGCCAGATCAGCTGCCCGCCGGTGTGGTGGGGCCTGATTTATCATCAGCCTCTTCTTCT GCTAGTTGCGTGGAGCAGAGTAATCCTGTAGTCAAGTTGAGGAAAAGGAAGAGCCAGCAGAAAAGAGTGGTAGAGCACGTCACAGAAGAAGCAATATGTT CAGACAAATGGGCCTGGCGAAAATACGGGCAGAAGCCCATAAAGGGATCCCCATTCCCGAGGAGCTACTACAGGTGCAGCAGCTTGAAAGGCTGCCCAGA CAGGAAACAAGTCGAGAGGAGCACTTCCGACAATTCCATCTTCATAATCACCTACACTGCTGACCACACCCACCCGCTCCCCACTCGCAGAAACTCACTC GCCGGCACCACGCGCACCAAGGCTCCTCCCGCCGCGGTGGCGCCGCCAGCTACCTCCGACGAGCAGCTTCATGAGGTGCTTGTGAAGGTTGAGGAGCTTC AGAGTAGTAACGTCGATGATGACTTCTTTTCCACGTCGGGTGTGGTTTTTAGCGACGATTTGTTTCCCGGCGGCATGGGGCACTTGGATGGCATGTTTCT GAATCGATGGTAG
AA sequence Show only first row Show all	>Lus10024676 pacid=23161629 polypeptide=Lus10024676 locus=Lus10024676.g ID=Lus10024676.BGIv1.0 annot-version=v1.0 MADWDLDAVVRGCNSNPLIPNPSFSPMELEFPVTSTGFCFEEYDDQFFDADLDGLLEGLYKPFCNYQQPSSTLLTADPPPPPDQLPAGVVGPDLSSASSS ASCVEQSNPVVKLRKRKSQQKRVVEHVTEEAICSDKWAWRKYGQKPIKGSPFPRSYYRCSSLKGCPDRKQVERSTSDNSIFIITYTADHTHPLPTRRNSL AGTTRTKAPPAAVAPPATSDEQLHEVLVKVEELQSSNVDDDFFSTSGVVFSDDLFPGGMGHLDGMFLNRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	0	1
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	3.0	0.9784
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	3.2	0.9812
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	3.3	0.9835
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	3.5	0.9816
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	5.8	0.9831
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	6.7	0.9827
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10009037 [exp]	9.9	0.9618
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	10.1	0.9789
AT2G19130			S-locus lectin protein kinase ...		Lus10026391 [exp]	11.2	0.9700
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	11.3	0.9786

Compare expression of checked genes

Lus10024676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.