Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25460 42 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT4G12560 41 / 0.0003 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G22350 41 / 0.0004 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023370 [exp] 145 / 1e-42 ND 37 / 0.008 Lus10023372 [exp] 142 / 6e-40 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10028961 [exp] 136 / 5e-38 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10013988 [exp] 136 / 6e-37 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10036360 [exp] 128 / 1e-36 AT4G04690 63 / 1e-11 F-box and associated interaction domains-containing protein (.1) Lus10007485 [exp] 114 / 1e-30 ND / Lus10015408 [exp] 117 / 2e-30 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10018968 [exp] 61 / 4e-11 ND 38 / 0.004 Lus10033825 [exp] 52 / 8e-08 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215901 [exp] 46 / 8e-06 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 43 / 9e-05 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G396800 [exp] 43 / 0.0001 AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 42 / 0.0001 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.016G012700 [exp] 42 / 0.0001 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 42 / 0.0001 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G137200 [exp] 41 / 0.0003 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.008G216223 [exp] 41 / 0.0004 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 40 / 0.001 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024677 pacid=23161515 polypeptide=Lus10024677 locus=Lus10024677.g ID=Lus10024677.BGIv1.0 annot-version=v1.0 ATGATTCCAAAGTTGTCCGAGTGTTGGAATTGCGGGAAGGATGCACGAGTGATGAAGAAGAATGTTTATAGTATGAGAACTGATTCATGGAAGATATTAG ATGTGAGTAACGAGAAAGTGTTTAGCCAGAGTGAAGCTATATATCTCCATCAGCGGTGGGACACATCTCGAAACGAGAAATGTTATTGGTTTTCGCTGAC GGACGGAGTTTGTGATCTTGTTTCGTTCGACATGAGTACAGAAGTGTTTGAACATGTCTCTCTCTCCCCTCCCGAATCCACCGGCATTGATGACTTTACC GTGTCGTGTTTCATGTTGAAAGGGATGGTTTTGGTCACATTCTACTGCGGAACTCACGATGAGACGTGGGGGATGTTGAAATATGGAGTTGCTGAATCTT GGATCAAATTGTTCACCTCGTCAAGAGATGACAACCTATACATGGAACACTTGGAAGTTTGGAAAGATGGTATGTATATCTGCTTTTGCAATAATGAACA CTCATATGCCACACCTGGTAAAATCTTCATCTGCGATCTTGCAACCGGCAAAAATATCGGTGATCATGTCGAAATTGAAGGTACAAATTGCAGCTTGAAA GCTTGCATTTTTACTCCGACTCGAGTATCGTTGGCTCTACTGTAA
AA sequence Show only first row Show all	>Lus10024677 pacid=23161515 polypeptide=Lus10024677 locus=Lus10024677.g ID=Lus10024677.BGIv1.0 annot-version=v1.0 MIPKLSECWNCGKDARVMKKNVYSMRTDSWKILDVSNEKVFSQSEAIYLHQRWDTSRNEKCYWFSLTDGVCDLVSFDMSTEVFEHVSLSPPESTGIDDFT VSCFMLKGMVLVTFYCGTHDETWGMLKYGVAESWIKLFTSSRDDNLYMEHLEVWKDGMYICFCNNEHSYATPGKIFICDLATGKNIGDHVEIEGTNCSLK ACIFTPTRVSLALL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024677 [exp]	0	1
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	3.6	0.9907
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	5.1	0.9907
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	6.2	0.9907
AT1G53050			Protein kinase superfamily pro...		Lus10005801 [exp]	6.8	0.7749
					Lus10009177 [exp]	7.2	0.9907
					Lus10035026 [exp]	8.1	0.9907
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	8.8	0.9907
					Lus10026785 [exp]	9.5	0.9907
					Lus10010582 [exp]	10.0	0.8277
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029384 [exp]	10.2	0.9907

Compare expression of checked genes

Lus10024677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.