Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 64 / 2e-11 O-methyltransferase family protein (.1) AT4G35150 56 / 1e-08 O-methyltransferase family protein (.1) AT1G51990 56 / 1e-08 O-methyltransferase family protein (.1.2) AT1G77520 50 / 1e-06 O-methyltransferase family protein (.1) AT1G77530 49 / 2e-06 O-methyltransferase family protein (.1) AT3G53140 47 / 6e-06 O-methyltransferase family protein (.1) AT5G53810 44 / 9e-05 O-methyltransferase family protein (.1) AT5G54160 42 / 0.0002 ATOMT1 O-methyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032304 [exp] 295 / 3e-99 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10012408 [exp] 180 / 1e-57 AT4G35150 49 / 6e-08 O-methyltransferase family protein (.1) Lus10038331 [exp] 177 / 2e-51 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10007035 [exp] 164 / 3e-48 AT4G35160 137 / 7e-38 O-methyltransferase family protein (.1) Lus10006692 [exp] 152 / 2e-43 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) Lus10006691 [exp] 150 / 1e-42 AT4G35150 150 / 1e-41 O-methyltransferase family protein (.1) Lus10018628 [exp] 135 / 5e-37 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10013945 [exp] 113 / 5e-29 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10001510 [exp] 113 / 7e-29 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121900 [exp] 123 / 1e-32 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 122 / 4e-32 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 120 / 1e-31 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 120 / 1e-31 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 119 / 3e-31 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 116 / 6e-30 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 115 / 1e-29 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G120900 [exp] 106 / 4e-28 AT4G35160 75 / 3e-16 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 106 / 2e-26 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.019G093200 [exp] 100 / 2e-26 AT4G35160 78 / 4e-18 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10024678 pacid=23161597 polypeptide=Lus10024678 locus=Lus10024678.g ID=Lus10024678.BGIv1.0 annot-version=v1.0 ATGGACGGAGAGAGAGCAATTGAGCTAATGGAAGCAGAAACTCAAGTCTGGAATCACGGCACAGGATACATCAAGTCGATGACTGTCCAATGTGCAATCG AGCTTGGAATTCCGGACGTTATCCACAGCCACGGAAGTCCGATGGCACTGCCTGACCTGGTCAACCGGCTCGGAATCCCTAACGAAAAAGCTCCTTTCCT CGGCCGCCTCATGCGTATGCTCGTCCACTTGGGCTACTTCAAAGAAGAAGAAGGCAACTACAGCTTGACCCCTCTATGCGATTTCCTCGTAAAGAAGAAC CCTTACAACACAACCTCCCTCGTCCTCTTCCTCAACCACCCAATGCTACTCGAACCATGGCGGCACATGACTGCATGGTTGCGAACTAGTACCAGTAGTA CTAGTAACCCTTTCGCATTCGCCAACGGCGGGGAGGAGAGGTACGCAATGGCCCCCGCAAACACGCAAGCGGTTCGGGCANNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCACATTTTTATGGGAAGCCGAAAATGGGTGCTGATT GACTGGGGGGATGAATCGTGCATGCAAATACTGAAAGAATGCAAGAAAGCGGCTCGGAAGAAGGTGATGATCGTTGACCACGTGATGGGTCACGAGAGCT ACAGTGAGGGTTCCTCCACAGAAACATTGTTGATGGTTGATTTGGCAGATATGGCTGCAATTGACGGCGTTATAAGAACCGAACAAGAGTGGGCTAAGCT CTTTCATCAAGCTGGCTTCTCCTCTTACACCATAACCCCCGTCCATGGCTACCGCACTTTCATCCAAGTCTTTCCTTGA
AA sequence Show only first row Show all	>Lus10024678 pacid=23161597 polypeptide=Lus10024678 locus=Lus10024678.g ID=Lus10024678.BGIv1.0 annot-version=v1.0 MDGERAIELMEAETQVWNHGTGYIKSMTVQCAIELGIPDVIHSHGSPMALPDLVNRLGIPNEKAPFLGRLMRMLVHLGYFKEEEGNYSLTPLCDFLVKKN PYNTTSLVLFLNHPMLLEPWRHMTAWLRTSTSSTSNPFAFANGGEERYAMAPANTQAVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIFMGSRKWVLI DWGDESCMQILKECKKAARKKVMIVDHVMGHESYSEGSSTETLLMVDLADMAAIDGVIRTEQEWAKLFHQAGFSSYTITPVHGYRTFIQVFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10024678 [exp]	0	1
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	2.4	0.9249
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10017716 [exp]	3.5	0.8280
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	7.6	0.8345
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	9.3	0.8345
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	12.2	0.8233
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	13.6	0.8196
					Lus10011637 [exp]	14.5	0.8148
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	15.5	0.8140
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	16.9	0.7920
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	17.3	0.8076

Compare expression of checked genes

Lus10024678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.