Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008062 [exp] 47 / 2e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024679 pacid=23161664 polypeptide=Lus10024679 locus=Lus10024679.g ID=Lus10024679.BGIv1.0 annot-version=v1.0 ATGCACGATGCTGCCTCTCCCCCGAAAGGAAAAGAGGTTGATGAAAACCATCATAAAGCTGTCAATGCCAGCAATGCCAACAGTTCTAACACAGATGATT TGTCTATTGACTTGTTGTCTCACCCGAATTCTTTCGATGTTTTAGATGCTGTCATCTGTCTTGTCACATATAGTTCAAATGAAGTTAAGGAGATAAGTGA GAAGGTTTCTGACAAGGAAGAACAATCTCAGTCAATTTTGCTTGAGGTTGCTGATACAATTGTAAGCCTTTCTGAAGTTGGTGTTAAGGAAGCTGAGGAT AATATTGGTGCAATTATTCCTTTGACTTTGGGGCCTCTTAATAATATAGAGTGGGTGAGTTGTGATGGGAACACCCCGGAGAATGATGTTATCGAAGAAG AAGAAAGTCAAAAACCTTCCCCTGCAAATTTTGGAGATTTTTTGTCAATTGGGAAGAGTTCTCCTGCTTATAAGAAGAGAGGGAGAGGGCGTGGTAGAGG ACGTGGTCAAAGTGGTGGAGGGCAACAACACATAACCGTAAATGATGGATACGTTCTCCATCCTCCAAAATGA
AA sequence Show only first row Show all	>Lus10024679 pacid=23161664 polypeptide=Lus10024679 locus=Lus10024679.g ID=Lus10024679.BGIv1.0 annot-version=v1.0 MHDAASPPKGKEVDENHHKAVNASNANSSNTDDLSIDLLSHPNSFDVLDAVICLVTYSSNEVKEISEKVSDKEEQSQSILLEVADTIVSLSEVGVKEAED NIGAIIPLTLGPLNNIEWVSCDGNTPENDVIEEEESQKPSPANFGDFLSIGKSSPAYKKRGRGRGRGRGQSGGGQQHITVNDGYVLHPPK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024679 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	1.0	0.8622
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10002868 [exp]	1.4	0.7854
					Lus10023538 [exp]	3.2	0.7554
AT4G39830			Cupredoxin superfamily protein...		Lus10037103 [exp]	3.5	0.7617
AT2G15220			Plant basic secretory protein ...		Lus10019805 [exp]	4.0	0.7417
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	4.2	0.7722
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001292 [exp]	4.2	0.7382
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10032323 [exp]	11.0	0.7535
AT1G64160			Disease resistance-responsive ...		Lus10028749 [exp]	12.7	0.6391
AT4G35160			O-methyltransferase family pro...		Lus10024678 [exp]	18.2	0.6890

Compare expression of checked genes

Lus10024679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.