Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23570 405 / 2e-141 SGT1A phosphatase-related (.1.2.3) AT4G11260 393 / 1e-136 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT5G09420 60 / 1e-09 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G04190 56 / 1e-08 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G17970 55 / 5e-08 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G62740 53 / 2e-07 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 49 / 4e-06 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G14950 46 / 4e-05 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT1G12270 45 / 6e-05 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G08320 43 / 0.0002 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032305 [exp] 552 / 0 AT4G11260 417 / 9e-147 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10027540 [exp] 411 / 1e-143 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10039297 [exp] 410 / 4e-143 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10042001 [exp] 58 / 6e-09 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 57 / 2e-08 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10021905 [exp] 55 / 3e-08 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041189 [exp] 54 / 5e-08 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009682 [exp] 52 / 4e-07 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10028154 [exp] 50 / 2e-06 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149800 [exp] 405 / 3e-141 AT4G11260 419 / 1e-146 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.004G071100 [exp] 393 / 1e-136 AT4G11260 385 / 1e-133 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.014G141800 [exp] 61 / 5e-10 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.008G156500 [exp] 57 / 6e-09 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G205300 [exp] 57 / 9e-09 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.012G046900 [exp] 57 / 1e-08 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 56 / 3e-08 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.010G082900 [exp] 55 / 3e-08 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G392601 [exp] 49 / 3e-06 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.005G177400 [exp] 48 / 6e-06 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0190 [flax] [poplar] PF05002 [flax] [poplar] SGS SGS domain
Representative CDS sequence Show only first row Show all	>Lus10024680 pacid=23161617 polypeptide=Lus10024680 locus=Lus10024680.g ID=Lus10024680.BGIv1.0 annot-version=v1.0 ATGGCGAACGAATTTGCAGAGAAGGCGAAAGAAGCGTTCTTGGACGACGACTTTCAGCTGGCAGCTGATTTGTACTCAAAGGCCATCGACTTGAACACTA GTAACCCCGATTACTTCGCCGACCGTGCTCAGGCCAACATCAAACTCTATCAGTTCACTGAGGCTGTTGCTGATGCAAACAGGGCGATTCTGTTGGATCC TAATATGGTGAAGGCATATCTGCGCAAGGGTACCGCCTGCATTAAGCTTGAGGAGTATCAGACAGCAAAGGCAGCACTTGAGAAAGGTGCTTCTATAGCT CCTGTAGACCAGAGTCAGAGATTTACCAAATTGATTGAAGAGTGCGACCGAAAGATAGCAGATGAGTCTGCCCCTCTTAGCAACGGTTTAGCTCAAAGTA ACATCTCGTCGACAACCACTCCATCTGCTTCTGTACCTGCCCATCCAGTCGAGGTGAACCCAGCCCCCACCACACCCAAGTACCGGCATGAATACTACCA GAAGCCAGAGGAGGTTGTTGTTACAATATTCGCCAAGGGAATCCCATCTGAAAATGTTACTGTCGATTTTGGTGATCAGATTCTTAGTGTTACCATAGAT GTTCCTGGAGAGGAGAGTTACCAATTTCAACCTCGGCTGTTTGCCAAAGTAGTACCTGCTAACTGCAGGTATCAGGTGCTCTCGACTAAGATTGAGATCC GCCTTGCCAAAGTTGAATCTATTCATTGGACATCTCTTGAGTATACGAACAATGCAATTGTCGCCCCTCTACGAAACGTGCCTGCCACTGTGTCTCAAAG GCCAGCATACCCATCATCGAAATCCAGAGGTAAAGATTGGGATAAGTTGGAAGCACAAGTGAAGAAAGAGGAAAAAGATGAGAAGCTGGATGGTGATGCT GCATTGAACAAGTTTTTCAGGGAAATCTACCAAAATGCTGACGAGGACATGAGAAGGGCCATGAGCAAATCTTTCGTCGAGTCGAGTGGGACAGTGCTAT CAACTGACTGGAAAGATGTGGGTTCGAAGAAGATCGAAGGCAGCGCCCCGGATGGCATGGAGATGAGGAAGTGGGAGTACTGA
AA sequence Show only first row Show all	>Lus10024680 pacid=23161617 polypeptide=Lus10024680 locus=Lus10024680.g ID=Lus10024680.BGIv1.0 annot-version=v1.0 MANEFAEKAKEAFLDDDFQLAADLYSKAIDLNTSNPDYFADRAQANIKLYQFTEAVADANRAILLDPNMVKAYLRKGTACIKLEEYQTAKAALEKGASIA PVDQSQRFTKLIEECDRKIADESAPLSNGLAQSNISSTTTPSASVPAHPVEVNPAPTTPKYRHEYYQKPEEVVVTIFAKGIPSENVTVDFGDQILSVTID VPGEESYQFQPRLFAKVVPANCRYQVLSTKIEIRLAKVESIHWTSLEYTNNAIVAPLRNVPATVSQRPAYPSSKSRGKDWDKLEAQVKKEEKDEKLDGDA ALNKFFREIYQNADEDMRRAMSKSFVESSGTVLSTDWKDVGSKKIEGSAPDGMEMRKWEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10032305 [exp]	1.0	0.9083
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	4.0	0.8486
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	4.2	0.8755
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Lus10032095 [exp]	4.2	0.8187
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	6.2	0.8601
AT1G03070			Bax inhibitor-1 family protein...		Lus10042631 [exp]	8.1	0.8232
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10018202 [exp]	8.5	0.8013
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10004645 [exp]	8.7	0.8128
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	11.8	0.8128
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	12.0	0.7927

Compare expression of checked genes

Lus10024680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.